RNA id: TU163552


Basic Information

Item Value
RNA id TU163552
length 313
lncRNA type inter_gene
GC content 0.47
exon number 2
gene id G142372
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 40584675 ~ 40585526 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAAATAATCTGAATACTGTAGGTCTAGGCGTTTTGGAGACATGTACTTAAAAATAATCTGAATACTGTAGGTCTAGGCGTTTTGGAGACACGTACTTAAAAATAATCTGAATActgtaggtctaggggttttggAGACACGTACTTAAAAATAATCTGAATACTGTAGGTCTAGGCGTTTTGGAGACACGTACTTAAAAATAATCTGAATACTGTAGGTCTAGGCGTTTTGGAGACACGTACTTAAAAATAATCTGAATACTGTAGGTCTAGGCGTTTTGGAGACACGTACTTAAAAATAATCTGAATACTGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU163492 lncRNA upstream 78453 40506019 ~ 40506222 (+) True G142314
TU163490 lncRNA upstream 78714 40505722 ~ 40505961 (+) True G142312
TU163382 lncRNA upstream 150811 40433529 ~ 40433864 (+) True G142204
TU163380 lncRNA upstream 152077 40432348 ~ 40432598 (+) True G142202
TU162960 lncRNA upstream 178429 40405494 ~ 40406246 (+) True G141799
TU163808 lncRNA downstream 167966 40753492 ~ 40753751 (+) True G142612
TU163839 lncRNA downstream 191672 40777198 ~ 40777407 (+) True G142643
TU163841 lncRNA downstream 200414 40785940 ~ 40786178 (+) True LOC110489695
TU163856 lncRNA downstream 217849 40803375 ~ 40803591 (+) True G142660
TU163937 lncRNA downstream 338786 40924312 ~ 40924529 (+) True G142733
XM_021562443.2 mRNA upstream 265412 40309178 ~ 40319263 (+) True galr1a
XM_036948247.1 mRNA upstream 359343 40115958 ~ 40225332 (+) False LOC110489640
XM_036948253.1 mRNA upstream 359343 40116432 ~ 40225332 (+) False LOC110489640
XM_036948250.1 mRNA upstream 359343 40116765 ~ 40225332 (+) False LOC110489640
XR_005036684.1 mRNA upstream 362033 40115958 ~ 40222642 (+) False LOC110489640
XM_021562456.2 mRNA downstream 50573 40636099 ~ 40653382 (+) True LOC110489685
XM_036948320.1 mRNA downstream 195500 40781026 ~ 40847759 (+) False LOC110489695
XM_036948326.1 mRNA downstream 197835 40783361 ~ 40847759 (+) False LOC110489695
XM_021562694.2 mRNA downstream 295648 40881174 ~ 40885140 (+) True LOC110489783
XM_036948451.1 mRNA downstream 709155 41294681 ~ 41355200 (+) False LOC110489815
TU160072 other upstream 2532931 38051359 ~ 38051744 (+) True G139179
TU159989 other upstream 2640663 37943742 ~ 37944012 (+) True G139101
TU159977 other upstream 2643961 37920391 ~ 37940714 (+) True G139089
TU159972 other upstream 2662605 37920348 ~ 37922070 (+) False G139089
TU164559 other downstream 953769 41539295 ~ 41541591 (+) True LOC110489834
TU165213 other downstream 1382848 41968374 ~ 41969317 (+) False G143938
TU165214 other downstream 1382848 41968374 ~ 41969222 (+) True G143938
TU166008 other downstream 1924804 42510330 ~ 42566030 (+) True G144661
TU167624 other downstream 3145346 43730872 ~ 43731218 (+) True G146054

Expression Profile