RNA id: TU163808


Basic Information

Item Value
RNA id TU163808
length 260
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G142612
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 40753492 ~ 40753751 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTCAACCACTGCTCCCCATGCGTTTCTCAGTAGGTTAGGTTACCCAACGTCTGCATAAGTAGCACACTTCTCTTTGTTGGCGGGGTAAATTGATATTTCACTCTTTTATGCAAACTGACACAACTCTCAAAAGTATCCCTGGTCCCCATCTACGCATGACATCACCACGTCTGCCTTGAATTAAAAAACAAAATGGCAGGATGAGAAATATGAGCGGATATTTGAATTTCAGTCACTATCGCATTTCCCTTATTTCACAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU163552 lncRNA upstream 167966 40584675 ~ 40585526 (+) True G142372
TU163492 lncRNA upstream 247270 40506019 ~ 40506222 (+) True G142314
TU163490 lncRNA upstream 247531 40505722 ~ 40505961 (+) True G142312
TU163382 lncRNA upstream 319628 40433529 ~ 40433864 (+) True G142204
TU163380 lncRNA upstream 320894 40432348 ~ 40432598 (+) True G142202
TU163839 lncRNA downstream 23447 40777198 ~ 40777407 (+) True G142643
TU163841 lncRNA downstream 32189 40785940 ~ 40786178 (+) True LOC110489695
TU163856 lncRNA downstream 49624 40803375 ~ 40803591 (+) True G142660
TU163937 lncRNA downstream 170561 40924312 ~ 40924529 (+) True G142733
TU163939 lncRNA downstream 172577 40926328 ~ 40926634 (+) True G142735
XM_021562456.2 mRNA upstream 100110 40636099 ~ 40653382 (+) True LOC110489685
XM_021562443.2 mRNA upstream 434229 40309178 ~ 40319263 (+) True galr1a
XM_036948247.1 mRNA upstream 528160 40115958 ~ 40225332 (+) False LOC110489640
XM_036948253.1 mRNA upstream 528160 40116432 ~ 40225332 (+) False LOC110489640
XM_036948250.1 mRNA upstream 528160 40116765 ~ 40225332 (+) False LOC110489640
XM_036948320.1 mRNA downstream 27275 40781026 ~ 40847759 (+) False LOC110489695
XM_036948326.1 mRNA downstream 29610 40783361 ~ 40847759 (+) False LOC110489695
XM_021562694.2 mRNA downstream 127423 40881174 ~ 40885140 (+) True LOC110489783
XM_036948451.1 mRNA downstream 540930 41294681 ~ 41355200 (+) False LOC110489815
XM_036948460.1 mRNA downstream 542639 41296390 ~ 41355070 (+) True LOC110489815
TU160072 other upstream 2701748 38051359 ~ 38051744 (+) True G139179
TU159989 other upstream 2809480 37943742 ~ 37944012 (+) True G139101
TU159977 other upstream 2812778 37920391 ~ 37940714 (+) True G139089
TU159972 other upstream 2831422 37920348 ~ 37922070 (+) False G139089
TU164559 other downstream 785544 41539295 ~ 41541591 (+) True LOC110489834
TU165213 other downstream 1214623 41968374 ~ 41969317 (+) False G143938
TU165214 other downstream 1214623 41968374 ~ 41969222 (+) True G143938
TU166008 other downstream 1756579 42510330 ~ 42566030 (+) True G144661
TU167624 other downstream 2977121 43730872 ~ 43731218 (+) True G146054

Expression Profile