RNA id: TU163908


Basic Information

Item Value
RNA id TU163908
length 3337
lncRNA type antisense_over
GC content 0.34
exon number 1
gene id G142706
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 40937352 ~ 40940688 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTTTAGAGTTATTCTGTAGGTCTTCAGCCTCCTTTTTCAGTTTGGCCTTCTCCTTTTCTAGATCAGCGATGGCTTTGCGTAGCTCATCAGCCTCGTTGTTGCTGCTCAGTCTCTGTGTCTCCACAAAGGTAAATTTTTCTTTAGTCGCTAGCTCTGTCTGATGAAGACGGGCACTGATCTCATCTGCTTGTTTCTTGAATTTCTTGGCCTCATTCTCTGCTTTGGACTGAGCATCACTAAGTTGGGACACTTTCACTTTGAGGTTTTCAGCTTCGGCTGTGATCTCCAGCTGTCTCCTGCGCTCAGCTTCCAAGGATTTCTGGAAGCCCTCAGTCTCTTCCTCAAGACGCTGCTGCATCAGTTGTTTATCCTCAAGCAGCTTCTGGGCCTGCTCTTGAGCCAGGTCCTTCTGTCTTTGGAGCATCTCAGcctctgctttcagtttacaTGCTTCCTGAATGGCAAGCATCTTCTCCTTTAGCATCTTCTCTGCAAGTGCCCTCTGTTGGGAGAGGTCAGATTCAGCGATTTGTCTCATGTGTGCAGCCTCTTGGGCTTCCACACTGAGTCTGGCAGCTTCCTCTGCAAGCTCCTTCATGTTCTCAGCTTCCTCAGCCAGGAATTTCTGAGTGTTATCCTTGTCCTTTTTGATAAGACGCTGGTTCTCCTGCTCAATTCTGAGTTTCAGTTTGACCAGCTCCTCCATCTGAATCTTGACTTTGAATAACTCCTCTTCCACCTGGGCCTTCTGCTTGACCGCATCACCGACTTCGTCCTTTAAGCGCTGCAGCTCCTCGTCTAAGACAGATTTTTGCTTGTCAGTTTCATCCAGCTGAAGCCTGACCTTTGCGAGCTCTTTCTCTACCTGAGACTTTTGACTCACTGTTTGCTCTGCAAGCTTTTTGTGCTTTTCCATCTCAGCATCTGCTTGTTGTTTCTGTTTGATTGCATCAGCCTCAGCCTGTGCTCGCTTGGCAGCTTCGAACTCTGCCTCCTTTCTCAATTTTACGGCTTCCTCTTGAGCTTTGGCTTGGTTGGCAGCTTCGAGTTCAGCAGCCTGTTTTTGGCGTTCTGCATCCTCTGCTTGTTGCCGGAGAAGAGCAGCCTCCTTCTCTGCCTTTTCCTTGGCAAGCTCTGCCTGTTTTGCAAGCATCTTGGCTTTCTCATACTCTCCCTTGAGCTGTTTCTGCATGAGGTTGTCCTCCTTCTGTTGGACAAGGACAGTCTGAACTTGCTGTTCTGCTGCATTGCATTTTTGTGCTGCTTGTTTAGATACGAGAATCTGTCTTTCTGCTTCCCTGTCAGCATCCTCTTTCTGCTTTTTGGCTTCATCTGCTTTCTTTTTGAGGCGCTCCACTTCCTCCTGTGCATTTTTGCACTGTCTACCTGCTTCTTCCTCTGCAGCAGTGATCTTTTTTACTTTTTCCTCTGCTTCGCGCCTGCGTTTCTCCTCCTCCAGGGCAAGTTTCCTGTGTTTCTCAGCCTCTTTTTCAGCTTGGAGTTTACTCTGTTGTGTTTCCTCTGCAATGTTTTTCAGTTTATTCAACTCCAGCTCCAAATCAAGCTTGCCAGATGAGGCTTTCTCAAAGTTTAGCTTGAGAATGCGAATTTCCTCCTCAACCACTCGTCTCTGCTTGAGAGTTTCATCGACAAGTGTCTTTTGTCTTCCCAACTCATTCTCAGATGACTTCTTGAGTTGATTGATCTTTTCTTCAATATCTTGCTTGTGCTGGCTGGCCTGGTCCTCCAGAGCTTTCCTCTGGTAAGCTTCATCCTCAGCTTGTCGTCTGAGTCGCTCATTCTCAGCCTCTTTTTCTTTGAGGGCAATTTCTGCTTCAGTCTTCATACGAGTTGCCTCATTAATGGCAGCAAGCTTCTCCTTGAGGATCCTTTCAGCTTCTGCTCTTTGACGAGCTGCCTCTTGCTCAGCAACTTGCCTTTGTCGCTTGGCTTCCTCAGCAATGGATCTAAGTTTGCCTGCCTCCTCAGCAAGGTCCCTCATTTTTGCAGCTTCAGATTCGAGGAGCTGTTTGCTCTTCTCAGTGTTGGACATGCTATCCTTTTCTGCTTTGGACTTTAGCTGCAGGAGTACATTCATTTCACTCCTCACTTTGGCCAGTTCATCTTCGAGCTGTTTCCTTTGCTGCTCAGCTGCACTGACTTCATTCTTCAGGCGGTACAGCTCGTCATCAAGCAGGGATCTCTGTTGCTCAGCATGTTCGAAGTCTGCCCTTAGCCGGATTAACTCCTGTTCTGCTGAGAGTTTCTGCTGAGCAGTTCCCTCAGCTAGCCTCCTCTGCCTCTCCAGCTCTTGCTCTGCCATATCTTTCTGTTTCAGTGCGGACTCCTCAGCTTTAGCCCTCTTCCTGGCCTCACGCTCAGCATCCTCCTTCTGTTTCTCGGCATCCTCCTGGGCACGGCTCTTTTTGTGAGCTTCTTCCTCAGCCTGGAGCCTCAAGCGGAGTGCCTCATTGGCCTTCTGCCTCCATTTCTCTAACTCCTTCTCCGCTTCCTCCCTGGCCATATCAGCCTCTTCCTGTTGCTTCTTGAGACGAGCTGCCTCCTCCTGCAGCTGGATGACTGTGACATGCTCTAGTTTGAGTGATTCCTCCAGCTTTGATGTCTTTTCAACATAGGACATGCGTTTACTCTGGAGTTCGGTTGCAGCACTCTTCTGTGCCACCTCCTGGGCAACTTTgatctgcctctccttctccacttcaGCTTGCTTCATGCGTCTCTCCGCCTCCTCCGCCTGCATCTTCAGCTTCTCAAGGTCTTCTAGAGCCTTCTGCTTCTGCTTGGCAGCCTCCTTCTCAGCCTCAGACTTTAACTTGAGCTCTTCCTCTGCCTTGCGTTTTTTCTGGGTCTCCTCGTTGACCTGTTTGCGGAGcttctcagcctcctcctgtgCAAGTTTCCTCAGCCTCTCGGCTTCAGAAGCTTTTTCCCGGAGTTGCTTGAGCTCATCCTCAGCTGTAGACTTCTGATTGACAGTGGTCTCCAGCTGGATCCTGATGATGCGGATTTCCTCCTCAATCTTGACTCTGCTATGATTGGCTTCTtctacctgttggctcttggACTTGATCTGCTGCTCTGAGAGATTTTTGAGCTCATGTAGTTCCAGCTGGATATTGTGCTTTTGCTTTTCTGCATCTACTGAAACAACTTGTCTCCTGCTGACTTCCTCCTGCATCATGAGCTTCAGCTCTTGAGCTTCCTGCTCGGCCTTGGCAATGGCCTTTGCATGAGATTCAGCTAGCTGCTTCTGTTTGTTTAACTCAGCCTGCATCTCTGCCATTTTTTTCCTGTCTTCCGCTTTCATTTTCTCAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU163910 lncRNA upstream 8870 40928219 ~ 40928482 (+) True G142707
TU163939 lncRNA upstream 10718 40926328 ~ 40926634 (+) True G142735
TU163937 lncRNA upstream 12823 40924312 ~ 40924529 (+) True G142733
TU163856 lncRNA upstream 133761 40803375 ~ 40803591 (+) True G142660
TU163841 lncRNA upstream 151174 40785940 ~ 40786178 (+) True LOC110489695
TU163941 lncRNA downstream 490 40941178 ~ 40941802 (+) True G142737
TU163942 lncRNA downstream 1553 40942241 ~ 40942677 (+) True G142738
TU163944 lncRNA downstream 2383 40943071 ~ 40943488 (+) False G142739
TU163943 lncRNA downstream 2464 40943152 ~ 40943488 (+) True G142739
TU163945 lncRNA downstream 5118 40945806 ~ 40946818 (+) True G142740
XM_021562694.2 mRNA upstream 52212 40881174 ~ 40885140 (+) True LOC110489783
XM_036948320.1 mRNA upstream 89593 40781026 ~ 40847759 (+) False LOC110489695
XM_036948326.1 mRNA upstream 89593 40783361 ~ 40847759 (+) False LOC110489695
XM_021562456.2 mRNA upstream 283970 40636099 ~ 40653382 (+) True LOC110489685
XM_021562443.2 mRNA upstream 618089 40309178 ~ 40319263 (+) True galr1a
XM_036948451.1 mRNA downstream 353993 41294681 ~ 41355200 (+) False LOC110489815
XM_036948460.1 mRNA downstream 355702 41296390 ~ 41355070 (+) True LOC110489815
XM_021562771.2 mRNA downstream 513571 41454259 ~ 41460908 (+) True LOC110489825
XM_021562780.2 mRNA downstream 598552 41539240 ~ 41541654 (+) False LOC110489834
XM_021562800.2 mRNA downstream 753749 41694437 ~ 41710790 (+) False LOC110489853
TU160072 other upstream 2885608 38051359 ~ 38051744 (+) True G139179
TU159989 other upstream 2993340 37943742 ~ 37944012 (+) True G139101
TU159977 other upstream 2996638 37920391 ~ 37940714 (+) True G139089
TU159972 other upstream 3015282 37920348 ~ 37922070 (+) False G139089
TU164559 other downstream 598607 41539295 ~ 41541591 (+) True LOC110489834
TU165213 other downstream 1027686 41968374 ~ 41969317 (+) False G143938
TU165214 other downstream 1027686 41968374 ~ 41969222 (+) True G143938
TU166008 other downstream 1569642 42510330 ~ 42566030 (+) True G144661
TU167624 other downstream 2790184 43730872 ~ 43731218 (+) True G146054