RNA id: TU163951


Basic Information

Item Value
RNA id TU163951
length 251
lncRNA type antisense_over
GC content 0.65
exon number 1
gene id G142746
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 40951325 ~ 40951575 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCCACGGTCTGGTGCAGGCCCCGGTGGCTGCCCAGCTGAGACTCCACGGTGGGCAGGTCCGAGCCCCACTCGGCCTCGTCAATCCGCCTCTGACTCTCCTCCACCCAGGTCAGCAGGTCCTGGGCGTAGCGCAGGGTCACCTCGTCCATCTCAGGACGCGCCCTGGTGGAGGGCTGCTGGATGGACTGGATCATCTGCGACTTGAGGCGCAGGTTATAATCGGTGCGCAGGTTCACAAGACGCTCGTGAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU163950 lncRNA upstream 599 40950499 ~ 40950726 (+) True G142745
TU163948 lncRNA upstream 1921 40949138 ~ 40949404 (+) True G142743
TU163946 lncRNA upstream 3598 40947525 ~ 40947727 (+) True G142741
TU163945 lncRNA upstream 4507 40945806 ~ 40946818 (+) True G142740
TU163944 lncRNA upstream 7837 40943071 ~ 40943488 (+) False G142739
TU163958 lncRNA downstream 6764 40958339 ~ 40958570 (+) True G142751
TU163959 lncRNA downstream 7595 40959170 ~ 40960343 (+) True G142752
TU163960 lncRNA downstream 8904 40960479 ~ 40960684 (+) True G142753
TU163961 lncRNA downstream 10120 40961695 ~ 40961914 (+) True G142754
TU164019 lncRNA downstream 84280 41035855 ~ 41036321 (+) True G142809
XM_021562694.2 mRNA upstream 66185 40881174 ~ 40885140 (+) True LOC110489783
XM_036948320.1 mRNA upstream 103566 40781026 ~ 40847759 (+) False LOC110489695
XM_036948326.1 mRNA upstream 103566 40783361 ~ 40847759 (+) False LOC110489695
XM_021562456.2 mRNA upstream 297943 40636099 ~ 40653382 (+) True LOC110489685
XM_021562443.2 mRNA upstream 632062 40309178 ~ 40319263 (+) True galr1a
XM_036948451.1 mRNA downstream 343106 41294681 ~ 41355200 (+) False LOC110489815
XM_036948460.1 mRNA downstream 344815 41296390 ~ 41355070 (+) True LOC110489815
XM_021562771.2 mRNA downstream 502684 41454259 ~ 41460908 (+) True LOC110489825
XM_021562780.2 mRNA downstream 587665 41539240 ~ 41541654 (+) False LOC110489834
XM_021562800.2 mRNA downstream 742862 41694437 ~ 41710790 (+) False LOC110489853
TU160072 other upstream 2899581 38051359 ~ 38051744 (+) True G139179
TU159989 other upstream 3007313 37943742 ~ 37944012 (+) True G139101
TU159977 other upstream 3010611 37920391 ~ 37940714 (+) True G139089
TU159972 other upstream 3029255 37920348 ~ 37922070 (+) False G139089
TU164559 other downstream 587720 41539295 ~ 41541591 (+) True LOC110489834
TU165213 other downstream 1016799 41968374 ~ 41969317 (+) False G143938
TU165214 other downstream 1016799 41968374 ~ 41969222 (+) True G143938
TU166008 other downstream 1558755 42510330 ~ 42566030 (+) True G144661
TU167624 other downstream 2779297 43730872 ~ 43731218 (+) True G146054

Expression Profile