RNA id: TU164075


Basic Information

Item Value
RNA id TU164075
length 225
lncRNA type intronic
GC content 0.44
exon number 1
gene id G142863
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 41110135 ~ 41110359 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtggaggtcctgggctggttacacgtggtctgcatttcttaggccggttggatgtaatgccaaattccctaaaacggcgttgtggtagagaaattaacattacattctctggaaacagatctgctggacattcctgctgtcagcatgccaattgcatactccctcaaaacttgagacatttgtggcattgtgttgtgtgacaaaaaaatcacattttagagtccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU164070 lncRNA upstream 4042 41105795 ~ 41106093 (+) True G142858
TU164062 lncRNA upstream 15070 41094810 ~ 41095065 (+) True G142850
TU164058 lncRNA upstream 20270 41089447 ~ 41089865 (+) True G142846
TU164057 lncRNA upstream 21236 41088700 ~ 41088899 (+) True G142845
TU164056 lncRNA upstream 24816 41085103 ~ 41085319 (+) True G142844
TU164076 lncRNA downstream 1347 41111706 ~ 41112083 (+) True G142864
TU164266 lncRNA downstream 4904 41115263 ~ 41115532 (+) True G143045
TU164287 lncRNA downstream 24004 41134363 ~ 41138768 (+) True G143066
TU164289 lncRNA downstream 32943 41143302 ~ 41143572 (+) True G143068
TU164356 lncRNA downstream 128533 41238892 ~ 41324218 (+) True G143121
XM_021562694.2 mRNA upstream 224995 40881174 ~ 40885140 (+) True LOC110489783
XM_036948320.1 mRNA upstream 262376 40781026 ~ 40847759 (+) False LOC110489695
XM_036948326.1 mRNA upstream 262376 40783361 ~ 40847759 (+) False LOC110489695
XM_021562456.2 mRNA upstream 456753 40636099 ~ 40653382 (+) True LOC110489685
XM_021562443.2 mRNA upstream 790872 40309178 ~ 40319263 (+) True galr1a
XM_036948451.1 mRNA downstream 184322 41294681 ~ 41355200 (+) False LOC110489815
XM_036948460.1 mRNA downstream 186031 41296390 ~ 41355070 (+) True LOC110489815
XM_021562771.2 mRNA downstream 343900 41454259 ~ 41460908 (+) True LOC110489825
XM_021562780.2 mRNA downstream 428881 41539240 ~ 41541654 (+) False LOC110489834
XM_021562800.2 mRNA downstream 584078 41694437 ~ 41710790 (+) False LOC110489853
TU160072 other upstream 3058391 38051359 ~ 38051744 (+) True G139179
TU159989 other upstream 3166123 37943742 ~ 37944012 (+) True G139101
TU159977 other upstream 3169421 37920391 ~ 37940714 (+) True G139089
TU159972 other upstream 3188065 37920348 ~ 37922070 (+) False G139089
TU164559 other downstream 428936 41539295 ~ 41541591 (+) True LOC110489834
TU165213 other downstream 858015 41968374 ~ 41969317 (+) False G143938
TU165214 other downstream 858015 41968374 ~ 41969222 (+) True G143938
TU166008 other downstream 1399971 42510330 ~ 42566030 (+) True G144661
TU167624 other downstream 2620513 43730872 ~ 43731218 (+) True G146054

Expression Profile