RNA id: TU165213


Basic Information

Item Value
RNA id TU165213
length 944
RNA type TUCP
GC content 0.39
exon number 1
gene id G143938
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 41968374 ~ 41969317 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTTTAAAGTCAATGGTGATATTTTCTGCTTATTCACCCCGTCAGGTAAGAAGTCCAGGAGACAGTCTAAAACGATATCCTTTACAATCTGAAAATCACTTTCCCCTTTCATATCAGCGCAAAATATTAGGTCAAGGTCCTTGTAGCCCAGTCCGCTATCCTCATGAAGAACGTGGCTTGCAGCAGACCCGTTTAACCGCACGTCCCGGACGTGGATATTCCTCTCCTCCATTCGACTACGCACCACCTTCACTATTTGTCGGGGTTTCATCTCCAAAGTGGGGAAGTTTCCACGGCCGTGGATGGGAATGGTCTCTGTCAGGATAGCATCAAGGCGCTGCACTTGTTCCCAGCCGAGAACGCTGATATTGCTGTTTTCAACCTCAGTTATAGGACTAGCACCAGTGCAACTATGTTCTTCAGACATTGTGGAGAAAATTAAACGGCAATTGACTATGAAGTTTCTTTAGAGACAGGTCCTTATCCAAATGTGGATTTTACGCGCAGTGACAGTAGGCTATAGAAGAGCAATGTCAACTTCATCCACATCGGTATCTTTAGTCAGAGTGCAGTACCTCTATATTATACTgtaacataaataaaatcaaggCGAAATAGGCTACTCAGTGCGCAGTAAAGAAATGACCAGCTGCTAACTCCAGTTGACTCGCGTATCTTTCGTCGTGAGATGAGGGAGGACAGTAAATAAGATCTTCTCTCAAAGATAGTCGTCACTTCTGCCTTGTCCTTTCTTTATAGAGCGTGAAACGTTTCCTCGTCGGTTGTCACTCAGTGCATCCGAGCTGTGCGCATCACCGTCTTTGGAGCTTGTTGGTATACTAGGAGTTCTGAGTTCGGGCTGTGACTCCATCGCCAAAGGCACGCCtatgatttttttatttgcatGAATACGCACTTGGCAAGTTCTGCAGTGATCAGCCCTCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU165132 lncRNA upstream 124030 41843975 ~ 41844344 (+) True G143860
TU165110 lncRNA upstream 130156 41792713 ~ 41838218 (+) True G143840
TU165047 lncRNA upstream 224586 41743519 ~ 41743788 (+) True G143779
TU165046 lncRNA upstream 225825 41742373 ~ 41742549 (+) True G143778
TU164993 lncRNA upstream 298067 41669792 ~ 41670307 (+) True G143739
TU165216 lncRNA downstream 2608 41971925 ~ 41972187 (+) True G143940
TU165226 lncRNA downstream 25625 41994942 ~ 41996046 (+) False G143950
TU165227 lncRNA downstream 25625 41994942 ~ 41996046 (+) True G143950
TU165230 lncRNA downstream 33134 42002451 ~ 42003243 (+) True G143953
TU165258 lncRNA downstream 103498 42072815 ~ 42073988 (+) True G143977
XM_021562836.2 mRNA upstream 141541 41750039 ~ 41826833 (+) True LOC110489877
XM_021562824.2 mRNA upstream 226464 41730685 ~ 41741910 (+) True LOC110489869
XM_021562800.2 mRNA upstream 257584 41694437 ~ 41710790 (+) False LOC110489853
XM_036948527.1 mRNA upstream 257584 41699259 ~ 41710790 (+) True LOC110489853
XM_021562780.2 mRNA upstream 426720 41539240 ~ 41541654 (+) False LOC110489834
XM_021562883.2 mRNA downstream 68183 42037500 ~ 42039843 (+) True LOC110489902
XR_005036748.1 mRNA downstream 97687 42067004 ~ 42071284 (+) False LOC110489918
XR_005036747.1 mRNA downstream 97687 42067004 ~ 42092073 (+) True LOC110489918
XM_036948609.1 mRNA downstream 130973 42100290 ~ 42141745 (+) False LOC110489908
XM_036948603.1 mRNA downstream 131007 42100324 ~ 42141745 (+) False LOC110489908
TU164559 other upstream 426783 41539295 ~ 41541591 (+) True LOC110489834
TU160072 other upstream 3916630 38051359 ~ 38051744 (+) True G139179
TU159989 other upstream 4024362 37943742 ~ 37944012 (+) True G139101
TU159977 other upstream 4027660 37920391 ~ 37940714 (+) True G139089
TU159972 other upstream 4046304 37920348 ~ 37922070 (+) False G139089
TU166008 other downstream 541013 42510330 ~ 42566030 (+) True G144661
TU167624 other downstream 1761555 43730872 ~ 43731218 (+) True G146054
TU167665 other downstream 1799390 43768707 ~ 43769162 (+) True G146091
TU167688 other downstream 1830087 43799404 ~ 43799853 (+) True G146114
TU167748 other downstream 1917279 43886596 ~ 43889609 (+) False G146165

Expression Profile