RNA id: TU165320


Basic Information

Item Value
RNA id TU165320
length 241
lncRNA type read_through
GC content 0.39
exon number 1
gene id G144016
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 42089290 ~ 42089530 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAATGGAGACTACTTGTACTGTGATGAAATTAATCGATAACTTCAATCAAAAACCTATTTGCATGAATCAATCAAAAGCATATTTGCATTAACAGGGAAAGCTGGGCAATATTCCAGTTCTACCCATTTTCCATGACATAATGTCACAAACATATGTATTCCCTAagcaggtgtgtgtgggtgtgcatgtaTCCCCCTATCCAATGTCTCCATGACATTGGGAGATGAGCtgagacagaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU165316 lncRNA upstream 5176 42083621 ~ 42084114 (+) True G144012
TU165258 lncRNA upstream 15302 42072815 ~ 42073988 (+) True G143977
TU165230 lncRNA upstream 86047 42002451 ~ 42003243 (+) True G143953
TU165226 lncRNA upstream 93244 41994942 ~ 41996046 (+) False G143950
TU165227 lncRNA upstream 93244 41994942 ~ 41996046 (+) True G143950
TU165321 lncRNA downstream 1082 42090612 ~ 42090915 (+) True G144017
TU165338 lncRNA downstream 49230 42138760 ~ 42139014 (+) True G144034
TU165295 lncRNA downstream 49518 42139048 ~ 42217775 (+) False LOC110489919
TU165303 lncRNA downstream 49518 42139048 ~ 42220203 (+) True LOC110489919
TU165482 lncRNA downstream 295668 42385198 ~ 42385672 (+) True G144176
XR_005036748.1 mRNA upstream 18006 42067004 ~ 42071284 (+) False LOC110489918
XM_021562883.2 mRNA upstream 49447 42037500 ~ 42039843 (+) True LOC110489902
XM_021562836.2 mRNA upstream 262457 41750039 ~ 41826833 (+) True LOC110489877
XM_021562824.2 mRNA upstream 347380 41730685 ~ 41741910 (+) True LOC110489869
XM_036948527.1 mRNA upstream 378500 41699259 ~ 41710790 (+) True LOC110489853
XM_036948609.1 mRNA downstream 10760 42100290 ~ 42141745 (+) False LOC110489908
XM_036948603.1 mRNA downstream 10794 42100324 ~ 42141745 (+) False LOC110489908
XM_036948594.1 mRNA downstream 10803 42100333 ~ 42141745 (+) False LOC110489908
XM_036948623.1 mRNA downstream 10803 42100333 ~ 42141745 (+) False LOC110489908
XM_036948631.1 mRNA downstream 10803 42100333 ~ 42141745 (+) False LOC110489908
TU165213 other upstream 119973 41968374 ~ 41969317 (+) False G143938
TU165214 other upstream 120068 41968374 ~ 41969222 (+) True G143938
TU164559 other upstream 547699 41539295 ~ 41541591 (+) True LOC110489834
TU160072 other upstream 4037546 38051359 ~ 38051744 (+) True G139179
TU159989 other upstream 4145278 37943742 ~ 37944012 (+) True G139101
TU166008 other downstream 420800 42510330 ~ 42566030 (+) True G144661
TU167624 other downstream 1641342 43730872 ~ 43731218 (+) True G146054
TU167665 other downstream 1679177 43768707 ~ 43769162 (+) True G146091
TU167688 other downstream 1709874 43799404 ~ 43799853 (+) True G146114
TU167748 other downstream 1797066 43886596 ~ 43889609 (+) False G146165

Expression Profile