RNA id: TU165964


Basic Information

Item Value
RNA id TU165964
length 250
lncRNA type inter_gene
GC content 0.52
exon number 1
gene id G144621
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 42397901 ~ 42398150 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

acacaacccaaccaagccgcactgcttcttaacacagcgcgcatccaacccggaagccagccgtaccaatgtgtcggaggaaacaccatacacctagcgacctggtcagcgtgcactgcgtccggccctccacaggagtcgctagtgcacgatgagacaaggatatccctatcggccaaaccctccctaacccggacgacgctaggccaattgtgcatcgccccatggacctcacAGTCGCGGCTGGCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU165952 lncRNA downstream 9064 42388636 ~ 42388837 (-) True G144609
TU165947 lncRNA downstream 11327 42386343 ~ 42386574 (-) True G144604
TU165833 lncRNA downstream 147873 42247891 ~ 42250028 (-) True G144496
TU165794 lncRNA downstream 211783 42184844 ~ 42186118 (-) True G144459
TU165749 lncRNA downstream 259331 42138359 ~ 42138570 (-) True G144428
TU165997 lncRNA upstream 15567 42413717 ~ 42414002 (-) True G144654
TU166344 lncRNA upstream 190408 42588558 ~ 42592604 (-) True G144941
TU166417 lncRNA upstream 242349 42640499 ~ 42642693 (-) True G144968
TU166453 lncRNA upstream 283258 42681408 ~ 42683345 (-) True G144995
TU166473 lncRNA upstream 319584 42717734 ~ 42717959 (-) True G145015
XR_005036768.1 mRNA downstream 57428 42314091 ~ 42340473 (-) False LOC118940237
XR_005036767.1 mRNA downstream 57428 42322365 ~ 42340473 (-) False LOC118940237
XR_005036769.1 mRNA downstream 57428 42339204 ~ 42340473 (-) True LOC118940237
XM_021562991.2 mRNA downstream 174143 42217647 ~ 42223758 (-) True LOC110489954
XM_036948656.1 mRNA downstream 297606 42085411 ~ 42100295 (-) True LOC110501561
XM_021563013.2 mRNA upstream 97316 42495466 ~ 42501897 (-) True LOC110489971
XM_021563025.2 mRNA upstream 112172 42510322 ~ 42517281 (-) False LOC110489980
XM_021563035.2 mRNA upstream 112172 42510322 ~ 42517281 (-) True LOC110489980
LOC118936750 mRNA upstream 287989 42686139 ~ 42687000 (-) True LOC118936750
XM_021563153.2 mRNA upstream 325928 42724078 ~ 42727549 (-) False LOC110490045
TU165059 other downstream 667479 41714546 ~ 41730422 (-) True LOC110489860
TU164135 other downstream 1534180 40863214 ~ 40863721 (-) True G142918
TU163223 other downstream 2156497 40224622 ~ 40241404 (-) False LOC110489653
TU166468 other upstream 308668 42706818 ~ 42707279 (-) True G145010
TU167289 other upstream 872567 43270717 ~ 43272516 (-) True G145767
TU167341 other upstream 974690 43372840 ~ 43392129 (-) True LOC110490183
TU168015 other upstream 1377913 43776063 ~ 43783719 (-) True LOC110490298
TU168885 other upstream 2036640 44434790 ~ 44436117 (-) True LOC110490352

Expression Profile