RNA id: TU166803



Basic Information


Item Value
RNA id TU166803
length 214
lncRNA type inter_gene
GC content 0.49
exon number 1
gene id G145315
representative True

Chromosome Information


Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 43099042 ~ 43099255 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GGGCATAATAACAGGGCACAAGGTTGAAAATATTGGAGATACAAATTAGAGGTATAAAATGGACATTCGCTACCATGCGGAATAAAGAACTTTGTAATCTGGGACATTTTAAATGTTTGGTCCCACCAGTTCACATCATAACCTTTATAGGTGCTTTGCCAGTGACAACAAAGACACTTCTTTAGGAAACAagaaacctggagaggcttgCATT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU166801 lncRNA upstream 480 43097939 ~ 43098562 (+) True G145313
TU166796 lncRNA upstream 9937 43088814 ~ 43089105 (+) True G145310
TU166747 lncRNA upstream 75838 43022983 ~ 43023204 (+) True G145271
TU166700 lncRNA upstream 149841 42948921 ~ 42949201 (+) True G145224
TU166681 lncRNA upstream 165832 42930102 ~ 42933210 (+) True G145211
TU166805 lncRNA downstream 6001 43105256 ~ 43105481 (+) True G145317
TU166812 lncRNA downstream 11754 43111009 ~ 43111274 (+) True G145324
TU166816 lncRNA downstream 19364 43118619 ~ 43118856 (+) True G145328
TU166820 lncRNA downstream 25736 43124991 ~ 43125265 (+) True G145332
TU166822 lncRNA downstream 27968 43127223 ~ 43127731 (+) True G145334
XM_021563309.2 mRNA upstream 1188 43091038 ~ 43097854 (+) False LOC110490122
XM_021563319.2 mRNA upstream 1188 43091038 ~ 43097854 (+) False LOC110490122
XM_036949040.1 mRNA upstream 1188 43091591 ~ 43097854 (+) False LOC110490122
XM_036949046.1 mRNA upstream 1188 43092026 ~ 43097854 (+) True LOC110490122
XM_021617697.2 mRNA upstream 57154 43032083 ~ 43041888 (+) True LOC100301866
XM_021563389.2 mRNA downstream 171411 43270666 ~ 43275284 (+) True LOC110490166
XR_002468674.2 mRNA downstream 251872 43351127 ~ 43353661 (+) True LOC110490176
LOC110501584 mRNA downstream 452327 43551582 ~ 43558937 (+) True LOC110501584
XM_021563468.2 mRNA downstream 471035 43570290 ~ 43596359 (+) False LOC110490199
XM_021563451.2 mRNA downstream 471036 43570291 ~ 43596359 (+) False LOC110490199
TU166008 other upstream 533012 42510330 ~ 42566030 (+) True G144661
TU165213 other upstream 1129725 41968374 ~ 41969317 (+) False G143938
TU165214 other upstream 1129820 41968374 ~ 41969222 (+) True G143938
TU164559 other upstream 1557451 41539295 ~ 41541591 (+) True LOC110489834
TU160072 other upstream 5047298 38051359 ~ 38051744 (+) True G139179
TU167624 other downstream 631617 43730872 ~ 43731218 (+) True G146054
TU167665 other downstream 669452 43768707 ~ 43769162 (+) True G146091
TU167688 other downstream 700149 43799404 ~ 43799853 (+) True G146114
TU167748 other downstream 787341 43886596 ~ 43889609 (+) False G146165
TU167816 other downstream 897525 43996780 ~ 43997065 (+) True G146226

Expression Profile