RNA id: TCONS_00028308


Basic Information

Item Value
RNA id TCONS_00028308
length 1893
RNA type mRNA
GC content 0.52
exon number 6
gene id XLOC_014241
representative False

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 41075488 ~ 41160943 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGATGAAGACGGAGGCCTCGGCAGAGAGGAACACCCTGAGGAGCGCGTCCCCGCACAGAAACGCCTACCGGGCTGAGTTCCAGGCGCTAAAGAAGGCGTTCGATCAACCGAGGCAGGATGGAGACCACAAACACAAAGACCCCGAGGGGGTCCGACAGCCTCGAGGGCGTCAATACGGAGCCCACGTCAGTcgcattaaaaatatgtttatgcaAATGGGGACAGAAAGCACCGGGTCAAACCGACAAGCCAGGGACGAGACTTCCCCACAGAAACTCAACAAGCCGACAAACTTCATCAACAGAACAGACGGCTCGGTGGTCAAGTTCCAGCAAGGCACTGGAGAGCGGACGTCCGGTGGCCATCACAACTCGAAGTTCTCTGAAACAAGGAAACTTTTCGAGCAGAGCTCCAGAGACGCCTCACAGTCGCCGGTGTACTCCTATGGTCGGGATAAAAGAGGTTCTCATGAGCATCTGGACGACTGGAGGGGAGCGCGTTCAAACAGAGGCAGCACAGACTCTTTGGACAGTCTTTGCTCCAGGACGGAGGCTTCTTCTCCCACTGTGAGCCAACTCAGCGCTGTGTTTGAAAATATAGACCAGCAGGGCTCCGGCGCTACCTTCAGAAGAAGCCATGGAAGTGGACGAGGGTTGTACTCTCCTGATGGCTTACAGAAACACGGGGAGGCCAGTGAGGATGACACCAGTGCTCGACAGTCTCCGTCAAGTGGTTTTTACAGGACGCGAGTGGGCAGCAAGCACAATCTTCCGGTTTCTTCATCTTCGGAAGATCTTCTCAGTCCTAGTCCTCTATCGGAGGCGAAAACTGATGAGAAGAAGAGTCAGGAGATGATTGAAGAATCCGGTGAACTGCAGCTTAAGGATGAGATTAACTCAACTAAGGCCTTGAATGGTTCTTCGACTCCGGCTGAAGTCAATGACGCTGCAGGACATTTGCTTGAGGCTACCAGAGTCCACGAGGACACGGACGGTCATGTGAAAGAGGAGTCTAGGCGGATTACAGAGGATCAGATTGAAGAAACCAATGAGGAATACTGTGGTAATGAGAGAGTTGTTTTCAATGCCGATGGAGATGCTTGCTACCAGGGCTGGGGCGAGAGCTGCACTGAACCAGAGGATGACCTATATGATGATGACCTTTCCTATGACCCAGGATCGGAAATTACGGAGATTCCTGGTCTTCCAGAAGAGGAAAAGGAGGATATTCCACAAAAACGGAAAATTCAATTCAGCTCTGCTCCCATAAAAGTGTTTAAAACCTACTGCAATGAAGATTACGACCGCAGGAATGAAGAGGTGGACCCAGTGGCGTCCTCAGCTGAGTATGAGCTGGAGAAACGGGTGGAGAAGCTGGAACTTCTCCCTGTGGAACTGGAAAAAGATGATGATGGCCTGGGCATCAGTATTATAGGAATGGGTGTTGGTGCTGACGCAGGCCTGGAGAAGCTGGGCATCTTTGTCAAGACTGTCATAGAGGGAGGAGCTGCAGAAAGAGATGGAAGAATTAAGGTGAACGATCAGATCGTGGAGGTGGACGGCACCAGTCTGGTTGGAGTAACTCAGAGTTTCGCTGCTTCTGTCCTGAGAAATACACAGGGAGTCGTCAGATTTGTGATTGGCCGAGAGCGTCCGGGACAGCAGAGTGAAGTGGCGCAGCTCATCAGTCAGACTTTGGAGCAGGAGAAACGTCAGAGAGAGATGATGGAGCAGCAATACGCACAATATGACGCGGATGACGATGAGGTGAGCGTTACGGACCTGTCTGACTCTGGCTCTGGTACAGGCTGCTCTCTTAAAATGGCTGTACGATCAGCACTGTTTTATAATTCTGGCACAGGCGGCTTCTCTCAGCAGACGGGCTGCCAGTGA

Function

GO:

id name namespace
GO:0007015 actin filament organization biological_process
GO:0019722 calcium-mediated signaling biological_process
GO:0031175 neuron projection development biological_process
GO:0030425 dendrite cellular_component
GO:0015629 actin cytoskeleton cellular_component
GO:0014069 postsynaptic density cellular_component
GO:0005737 cytoplasm cellular_component
GO:0051015 actin filament binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060503-660 Predicted to enable actin filament binding activity. Predicted to be involved in actin filament organization; calcium-mediated signaling; and neuron projection development. Predicted to act upstream of or within nervous system development. Predicted to be active in several cellular components, including actin cytoskeleton; dendrite; and postsynaptic density. Orthologous to human PPP1R9A (protein phosphatase 1 regulatory subunit 9A).

Ensembl:

ensembl_id ENSDART00000087295

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00030028 lncRNA upstream 343256 40692428 ~ 40736984 (+) True XLOC_014234
TCONS_00028294 lncRNA upstream 739611 40337564 ~ 40340629 (+) True XLOC_014231
TCONS_00030027 lncRNA upstream 747146 40328712 ~ 40333094 (+) False XLOC_014230
TCONS_00030026 lncRNA upstream 747146 40328712 ~ 40333094 (+) True XLOC_014230
TCONS_00028286 lncRNA upstream 874770 40186385 ~ 40205470 (+) True XLOC_014227
TCONS_00030029 lncRNA downstream 58439 41187812 ~ 41191519 (+) True XLOC_014243
TCONS_00030030 lncRNA downstream 104435 41233808 ~ 41238528 (+) True XLOC_014244
TCONS_00030031 lncRNA downstream 708378 41837751 ~ 41841201 (+) False XLOC_014252
TCONS_00030032 lncRNA downstream 708698 41838071 ~ 41841201 (+) True XLOC_014252
TCONS_00030033 lncRNA downstream 998550 42127923 ~ 42140654 (+) True XLOC_014255
TCONS_00028306 mRNA upstream 46016 41006975 ~ 41034224 (+) False XLOC_014240
TCONS_00028305 mRNA upstream 46016 41006975 ~ 41034224 (+) True XLOC_014240
TCONS_00028304 mRNA upstream 77260 40983221 ~ 41002980 (+) True XLOC_014239
TCONS_00028302 mRNA upstream 181640 40861853 ~ 40898600 (+) True XLOC_014237
TCONS_00028301 mRNA upstream 220981 40856807 ~ 40859259 (+) True XLOC_014236
TCONS_00028309 mRNA downstream 3056 41132429 ~ 41142175 (+) True XLOC_014241
TCONS_00028310 mRNA downstream 40623 41169996 ~ 41182251 (+) False XLOC_014242
TCONS_00028311 mRNA downstream 44013 41173386 ~ 41178235 (+) True XLOC_014242
TCONS_00028312 mRNA downstream 290146 41419519 ~ 41466867 (+) False XLOC_014245
TCONS_00028313 mRNA downstream 290146 41419519 ~ 41466924 (+) False XLOC_014245
TCONS_00028303 other upstream 121624 40958500 ~ 40958616 (+) True XLOC_014238
TCONS_00028293 other upstream 735503 40337554 ~ 40344737 (+) False XLOC_014231
TCONS_00028276 other upstream 953476 40116262 ~ 40126764 (+) False XLOC_014226
TCONS_00028268 other upstream 1024849 40025928 ~ 40055391 (+) False XLOC_014223
TCONS_00028266 other upstream 1205293 39874831 ~ 39874947 (+) True XLOC_014221
TCONS_00028333 other downstream 1059617 42188990 ~ 42189104 (+) True XLOC_014257
TCONS_00028342 other downstream 1207944 42337317 ~ 42337431 (+) True XLOC_014261
TCONS_00028353 other downstream 1603315 42732688 ~ 42735285 (+) False XLOC_014270
TCONS_00028365 other downstream 1786046 42915419 ~ 42915541 (+) True XLOC_014274
TCONS_00028379 other downstream 1948371 43077744 ~ 43077879 (+) True XLOC_014279

Expression Profile

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