RNA id: TU167613



Basic Information


Item Value
RNA id TU167613
length 385
lncRNA type antisense_over
GC content 0.49
exon number 1
gene id G146043
representative True

Chromosome Information


Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 43723838 ~ 43724222 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TTCCGTAAACTTCTCGCTGCTTTTCTTCTTCCTCCACTTCCATGGTTTGAAGATCTTGCCAAGGGTAGAGAACTTGCCCTTGCCCTTGAATGGGAGAGGGGTGCTGTCCCCATCTCCCTCCGTCGTGGTGTGCAGGTGGTCAACTTCATCAACTGGAGCAATGGCGTCAGAGAGACAAGAATAGAGAGTCAAGAAACACTGTTGAACTATGACAACTACAACTGGGCATCTGCAACATAACAACAGCACAGAGAGCAGAGGTAACCCTTGCCCAGACATTTTTTACAGTAGCCTACCTGAgctctaactcaggcgagcaaaaccttgtgCACCAGCTGCTGTTTAGCCTGGCCCATGCACTCTTGAGTAAAGTGTTGTATTAGAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU167620 lncRNA upstream 738 43722863 ~ 43723100 (+) True G146050
TU167612 lncRNA upstream 3980 43719356 ~ 43719858 (+) True G146042
TU167607 lncRNA upstream 7929 43706769 ~ 43715909 (+) True G146039
TU167016 lncRNA upstream 292903 43430711 ~ 43430935 (+) True G145513
TU167011 lncRNA upstream 298197 43425437 ~ 43425641 (+) True G145508
TU167623 lncRNA downstream 5299 43729521 ~ 43729792 (+) True G146053
TU167625 lncRNA downstream 7343 43731565 ~ 43731774 (+) True G146055
TU167630 lncRNA downstream 11549 43735771 ~ 43736190 (+) True G146060
TU167631 lncRNA downstream 12454 43736676 ~ 43736890 (+) True G146061
TU167632 lncRNA downstream 12961 43737183 ~ 43737485 (+) True G146062
XM_036949255.1 mRNA upstream 72086 43630480 ~ 43651752 (+) False LOC110490231
XM_021563634.2 mRNA downstream 222866 43947088 ~ 43950347 (+) False LOC110490316
XM_021563644.2 mRNA downstream 223712 43947934 ~ 43950347 (+) True LOC110490316
XM_021563656.2 mRNA downstream 230827 43955049 ~ 43960992 (+) True LOC110490326
XM_021563788.2 mRNA downstream 740752 44464974 ~ 44472924 (+) False LOC110490388
XM_021563780.2 mRNA downstream 741001 44465223 ~ 44472924 (+) False LOC110490388
TU166008 other upstream 1157808 42510330 ~ 42566030 (+) True G144661
TU165213 other upstream 1754521 41968374 ~ 41969317 (+) False G143938
TU165214 other upstream 1754616 41968374 ~ 41969222 (+) True G143938
TU164559 other upstream 2182247 41539295 ~ 41541591 (+) True LOC110489834
TU160072 other upstream 5672094 38051359 ~ 38051744 (+) True G139179
TU167624 other downstream 6650 43730872 ~ 43731218 (+) True G146054
TU167665 other downstream 44485 43768707 ~ 43769162 (+) True G146091
TU167688 other downstream 75182 43799404 ~ 43799853 (+) True G146114
TU167748 other downstream 162374 43886596 ~ 43889609 (+) False G146165
TU167816 other downstream 272558 43996780 ~ 43997065 (+) True G146226

Expression Profile