Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00028311 |
| length | 794 |
| RNA type | mRNA |
| GC content | 0.52 |
| exon number | 2 |
| gene id | XLOC_014242 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007130.7 |
| NCBI id | CM002903.2 |
| chromosome length | 48449771 |
| location | 41169996 ~ 41182251 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0035556 | intracellular signal transduction | biological_process |
| GO:0016567 | protein ubiquitination | biological_process |
| id | description |
|---|---|
| ko04121 | Ubiquitin system |
| id | description |
|---|---|
| ZDB-GENE-050417-100 | Predicted to be involved in protein ubiquitination. Predicted to act upstream of or within intracellular signal transduction. Orthologous to human ASB4 (ankyrin repeat and SOCS box containing 4). |
| ensembl_id | ENSDART00000142773 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00030028 | lncRNA | upstream | 436402 | 40692428 ~ 40736984 (+) | True | XLOC_014234 |
| TCONS_00028294 | lncRNA | upstream | 832757 | 40337564 ~ 40340629 (+) | True | XLOC_014231 |
| TCONS_00030027 | lncRNA | upstream | 840292 | 40328712 ~ 40333094 (+) | False | XLOC_014230 |
| TCONS_00030026 | lncRNA | upstream | 840292 | 40328712 ~ 40333094 (+) | True | XLOC_014230 |
| TCONS_00028286 | lncRNA | upstream | 967916 | 40186385 ~ 40205470 (+) | True | XLOC_014227 |
| TCONS_00030029 | lncRNA | downstream | 9577 | 41187812 ~ 41191519 (+) | True | XLOC_014243 |
| TCONS_00030030 | lncRNA | downstream | 55573 | 41233808 ~ 41238528 (+) | True | XLOC_014244 |
| TCONS_00030031 | lncRNA | downstream | 659516 | 41837751 ~ 41841201 (+) | False | XLOC_014252 |
| TCONS_00030032 | lncRNA | downstream | 659836 | 41838071 ~ 41841201 (+) | True | XLOC_014252 |
| TCONS_00030033 | lncRNA | downstream | 949688 | 42127923 ~ 42140654 (+) | True | XLOC_014255 |
| TCONS_00028307 | mRNA | upstream | 12443 | 41075488 ~ 41160943 (+) | False | XLOC_014241 |
| TCONS_00028309 | mRNA | upstream | 31211 | 41132429 ~ 41142175 (+) | True | XLOC_014241 |
| TCONS_00028308 | mRNA | upstream | 44013 | 41080240 ~ 41129373 (+) | False | XLOC_014241 |
| TCONS_00028306 | mRNA | upstream | 139162 | 41006975 ~ 41034224 (+) | False | XLOC_014240 |
| TCONS_00028305 | mRNA | upstream | 139162 | 41006975 ~ 41034224 (+) | True | XLOC_014240 |
| TCONS_00028312 | mRNA | downstream | 241284 | 41419519 ~ 41466867 (+) | False | XLOC_014245 |
| TCONS_00028313 | mRNA | downstream | 241284 | 41419519 ~ 41466924 (+) | False | XLOC_014245 |
| TCONS_00028314 | mRNA | downstream | 286635 | 41464870 ~ 41467041 (+) | True | XLOC_014245 |
| TCONS_00028315 | mRNA | downstream | 301755 | 41479990 ~ 41499645 (+) | True | XLOC_014246 |
| TCONS_00028316 | mRNA | downstream | 331721 | 41509956 ~ 41513809 (+) | False | XLOC_014247 |
| TCONS_00028303 | other | upstream | 214770 | 40958500 ~ 40958616 (+) | True | XLOC_014238 |
| TCONS_00028293 | other | upstream | 828649 | 40337554 ~ 40344737 (+) | False | XLOC_014231 |
| TCONS_00028276 | other | upstream | 1046622 | 40116262 ~ 40126764 (+) | False | XLOC_014226 |
| TCONS_00028268 | other | upstream | 1117995 | 40025928 ~ 40055391 (+) | False | XLOC_014223 |
| TCONS_00028266 | other | upstream | 1298439 | 39874831 ~ 39874947 (+) | True | XLOC_014221 |
| TCONS_00028333 | other | downstream | 1010755 | 42188990 ~ 42189104 (+) | True | XLOC_014257 |
| TCONS_00028342 | other | downstream | 1159082 | 42337317 ~ 42337431 (+) | True | XLOC_014261 |
| TCONS_00028353 | other | downstream | 1554453 | 42732688 ~ 42735285 (+) | False | XLOC_014270 |
| TCONS_00028365 | other | downstream | 1737184 | 42915419 ~ 42915541 (+) | True | XLOC_014274 |
| TCONS_00028379 | other | downstream | 1899509 | 43077744 ~ 43077879 (+) | True | XLOC_014279 |
