RNA id: TU167623



Basic Information


Item Value
RNA id TU167623
length 272
lncRNA type antisense_over
GC content 0.53
exon number 1
gene id G146053
representative True

Chromosome Information


Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 43729521 ~ 43729792 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


AGAGCAGGTGtatgtgagtgactgagtgagtgagtgagtaagtaaGCTAGAAACTCACCGCTGCGGGGGATGTGTTGGTCCTGAGCTGGGGTCTCCAGAGGAAGGCTCTGTCCCATGATCCAGCCCCAGAGGGGCCTGTTTTGCTCTTTCTACCCAGGAATAGGCACTCCGTGCTGGGCAGAGGAGGAGCACACCTGGTCCACAGCTTGTTCAACCAAGTTCACTAGACTCCTCTTTCTGTCTATTTCACCAGCAACTCTTTGCAACTTTCT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU167613 lncRNA upstream 5299 43723838 ~ 43724222 (+) True G146043
TU167620 lncRNA upstream 6421 43722863 ~ 43723100 (+) True G146050
TU167612 lncRNA upstream 9663 43719356 ~ 43719858 (+) True G146042
TU167607 lncRNA upstream 13612 43706769 ~ 43715909 (+) True G146039
TU167016 lncRNA upstream 298586 43430711 ~ 43430935 (+) True G145513
TU167625 lncRNA downstream 1773 43731565 ~ 43731774 (+) True G146055
TU167630 lncRNA downstream 5979 43735771 ~ 43736190 (+) True G146060
TU167631 lncRNA downstream 6884 43736676 ~ 43736890 (+) True G146061
TU167632 lncRNA downstream 7391 43737183 ~ 43737485 (+) True G146062
TU167633 lncRNA downstream 7894 43737686 ~ 43747147 (+) True G146063
XM_036949255.1 mRNA upstream 77769 43630480 ~ 43651752 (+) False LOC110490231
XM_021563634.2 mRNA downstream 217296 43947088 ~ 43950347 (+) False LOC110490316
XM_021563644.2 mRNA downstream 218142 43947934 ~ 43950347 (+) True LOC110490316
XM_021563656.2 mRNA downstream 225257 43955049 ~ 43960992 (+) True LOC110490326
XM_021563788.2 mRNA downstream 735182 44464974 ~ 44472924 (+) False LOC110490388
XM_021563780.2 mRNA downstream 735431 44465223 ~ 44472924 (+) False LOC110490388
TU166008 other upstream 1163491 42510330 ~ 42566030 (+) True G144661
TU165213 other upstream 1760204 41968374 ~ 41969317 (+) False G143938
TU165214 other upstream 1760299 41968374 ~ 41969222 (+) True G143938
TU164559 other upstream 2187930 41539295 ~ 41541591 (+) True LOC110489834
TU160072 other upstream 5677777 38051359 ~ 38051744 (+) True G139179
TU167624 other downstream 1080 43730872 ~ 43731218 (+) True G146054
TU167665 other downstream 38915 43768707 ~ 43769162 (+) True G146091
TU167688 other downstream 69612 43799404 ~ 43799853 (+) True G146114
TU167748 other downstream 156804 43886596 ~ 43889609 (+) False G146165
TU167816 other downstream 266988 43996780 ~ 43997065 (+) True G146226

Expression Profile