RNA id: TU167624



Basic Information


Item Value
RNA id TU167624
length 347
RNA type TUCP
GC content 0.52
exon number 1
gene id G146054
representative True

Chromosome Information


Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 43730872 ~ 43731218 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ggggctccatgcaagatctcacctcgtggcgcatcaatgatcatgaggaaggtgagggatcagcccagaactacacgacaggacctggtcaatgacctgaagagagctgggaccacagtctcaaagaaaaccattagtaacacactacgccgtcatggattaaaatcctgcagcgcacgcaaggtccccctgctcaagccagcgcatgtccaggcccgtctgaagtttgccaatgaccatctggatgatccagaggaggaatgggagaaggtcatgtggtcatgagacaaaaattgagctttttggtctaaactccactcgccgtgtttggaggaagaagaaggatg

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU167623 lncRNA upstream 1080 43729521 ~ 43729792 (+) True G146053
TU167613 lncRNA upstream 6650 43723838 ~ 43724222 (+) True G146043
TU167620 lncRNA upstream 7772 43722863 ~ 43723100 (+) True G146050
TU167612 lncRNA upstream 11014 43719356 ~ 43719858 (+) True G146042
TU167607 lncRNA upstream 14963 43706769 ~ 43715909 (+) True G146039
TU167625 lncRNA downstream 347 43731565 ~ 43731774 (+) True G146055
TU167630 lncRNA downstream 4553 43735771 ~ 43736190 (+) True G146060
TU167631 lncRNA downstream 5458 43736676 ~ 43736890 (+) True G146061
TU167632 lncRNA downstream 5965 43737183 ~ 43737485 (+) True G146062
TU167633 lncRNA downstream 6468 43737686 ~ 43747147 (+) True G146063
XM_021563502.2 mRNA upstream 79120 43630465 ~ 43651752 (+) False LOC110490231
XM_021563510.2 mRNA upstream 79120 43630466 ~ 43651752 (+) False LOC110490231
XM_036949199.1 mRNA upstream 79120 43630466 ~ 43651752 (+) False LOC110490231
XM_036949207.1 mRNA upstream 79120 43630466 ~ 43651752 (+) False LOC110490231
XM_036949214.1 mRNA upstream 79120 43630470 ~ 43651752 (+) False LOC110490231
XM_021563634.2 mRNA downstream 215870 43947088 ~ 43950347 (+) False LOC110490316
XM_021563644.2 mRNA downstream 216716 43947934 ~ 43950347 (+) True LOC110490316
XM_021563656.2 mRNA downstream 223831 43955049 ~ 43960992 (+) True LOC110490326
XM_021563788.2 mRNA downstream 733756 44464974 ~ 44472924 (+) False LOC110490388
XM_021563780.2 mRNA downstream 734005 44465223 ~ 44472924 (+) False LOC110490388
TU166008 other upstream 1164842 42510330 ~ 42566030 (+) True G144661
TU165213 other upstream 1761555 41968374 ~ 41969317 (+) False G143938
TU165214 other upstream 1761650 41968374 ~ 41969222 (+) True G143938
TU164559 other upstream 2189281 41539295 ~ 41541591 (+) True LOC110489834
TU160072 other upstream 5679128 38051359 ~ 38051744 (+) True G139179
TU167665 other downstream 37489 43768707 ~ 43769162 (+) True G146091
TU167688 other downstream 68186 43799404 ~ 43799853 (+) True G146114
TU167748 other downstream 155378 43886596 ~ 43889609 (+) False G146165
TU167816 other downstream 265562 43996780 ~ 43997065 (+) True G146226
TU168471 other downstream 697935 44429153 ~ 44429393 (+) True G146841

Expression Profile