RNA id: TU167633



Basic Information


Item Value
RNA id TU167633
length 738
lncRNA type antisense_over
GC content 0.52
exon number 2
gene id G146063
representative True

Chromosome Information


Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 43737686 ~ 43747147 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CTGTAGAAGGTCATTGGTGTTGGGAGGAGGTGGTCTTCAGCAGCAGTACGTAGGTCTGTGGGGAGAGGTTTCAGGCCTCCCTGGAGATGCCCTCTCGGCTCAGTCCCGCTGTCTGCTCCAGAAGGGTCTTTATGCCAGATCTCTCCCCCGCCAAAGGTGTCTTGGAGCTGGGTGCGCAGTGGCAGACTTACAGCCTCTCTAGTCCCTCTCGTGCGAATCTCTCCGATCAGCACCGCTCCCCAGCCCCCCCTCTCGGATACGGACAGAAGATGGAGTCTGTTCTCAATCCGGGTCGGCTACACGTCATCACCGAGCCTACCCCAGAATAGCACCACTCACCGCAGGGACTTGTGGCCCACTTTCCCAAGGAGCCCAAAACGCTCCTATCCCCTGAAAAACTTTTTAAAAATCTCTCCACCTGTTTTAGAGCACTGTTCAACAGGAAGCTATTGCAAATGGACCTTTGAAACTCACTGTTCTTCGGTAACTATGAGCAATGAGAATGTGTTTATATCCTCTGTCCTAAAGGCAGAAGTAAGGACTCCACCCAATGTGGTGTGTGGAAGTGAAGTTCCTGATTATATACAATAGACAAGATCGCTGGCTTGGACAGCTGTCAGGTATCAGCAGGGACAGCTGTCAGGTAATCTAGCTTGAACCCACACCTTTTGCATGGTCAGTATTTTCACACACCCATCTTCCAAGCTCTCTGCATCCCATATTTCCATCCTCGTGCAT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU167632 lncRNA upstream 201 43737183 ~ 43737485 (+) True G146062
TU167631 lncRNA upstream 796 43736676 ~ 43736890 (+) True G146061
TU167630 lncRNA upstream 1496 43735771 ~ 43736190 (+) True G146060
TU167625 lncRNA upstream 5912 43731565 ~ 43731774 (+) True G146055
TU167623 lncRNA upstream 7894 43729521 ~ 43729792 (+) True G146053
TU167644 lncRNA downstream 3026 43750173 ~ 43750458 (+) True G146074
TU167648 lncRNA downstream 7707 43754854 ~ 43755076 (+) True G146078
TU167653 lncRNA downstream 12954 43760101 ~ 43760409 (+) True G146083
TU167610 lncRNA downstream 19735 43766882 ~ 43767280 (+) True G146040
TU167666 lncRNA downstream 22309 43769456 ~ 43769718 (+) True G146092
XM_036949255.1 mRNA upstream 85934 43630480 ~ 43651752 (+) False LOC110490231
XM_021563634.2 mRNA downstream 199941 43947088 ~ 43950347 (+) False LOC110490316
XM_021563644.2 mRNA downstream 200787 43947934 ~ 43950347 (+) True LOC110490316
XM_021563656.2 mRNA downstream 207902 43955049 ~ 43960992 (+) True LOC110490326
XM_021563788.2 mRNA downstream 717827 44464974 ~ 44472924 (+) False LOC110490388
XM_021563780.2 mRNA downstream 718076 44465223 ~ 44472924 (+) False LOC110490388
TU167624 other upstream 6468 43730872 ~ 43731218 (+) True G146054
TU166008 other upstream 1171656 42510330 ~ 42566030 (+) True G144661
TU165213 other upstream 1768369 41968374 ~ 41969317 (+) False G143938
TU165214 other upstream 1768464 41968374 ~ 41969222 (+) True G143938
TU164559 other upstream 2196095 41539295 ~ 41541591 (+) True LOC110489834
TU167665 other downstream 21560 43768707 ~ 43769162 (+) True G146091
TU167688 other downstream 52257 43799404 ~ 43799853 (+) True G146114
TU167748 other downstream 139449 43886596 ~ 43889609 (+) False G146165
TU167816 other downstream 249633 43996780 ~ 43997065 (+) True G146226
TU168471 other downstream 682006 44429153 ~ 44429393 (+) True G146841

Expression Profile