RNA id: TU167665



Basic Information


Item Value
RNA id TU167665
length 456
RNA type TUCP
GC content 0.44
exon number 1
gene id G146091
representative True

Chromosome Information


Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 43768707 ~ 43769162 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


gtcaaacatggtggtggcagcatcatggtttgggcctgcttttcttcagcagggacagggaagatggttaaaattgatgggaagatggatggagccaaatacaggaccattctggaagaaaacctgatggagtctgcaaaagacctgagactgggacggagatttgtcttccaacaagacaatgatctaaaacataaagcaaaatctacaatggaatggttcaaaaataaatatatgcaggtgttagaatggccaagtcaaagtccagacctgaatccaatcgagaatctgtggaaagaactgaaaactgctgttcacaaatgctctccatccaacctcactgagctcgagctgttttgcaaggaggaatgggaaaaaatttcagtctctcgatgtgcaaaactgatagagacataccccaagcgacttacagctgtaatcgcagcaaaaggtggc

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU167610 lncRNA upstream 1427 43766882 ~ 43767280 (+) True G146040
TU167653 lncRNA upstream 8298 43760101 ~ 43760409 (+) True G146083
TU167648 lncRNA upstream 13631 43754854 ~ 43755076 (+) True G146078
TU167644 lncRNA upstream 18249 43750173 ~ 43750458 (+) True G146074
TU167633 lncRNA upstream 21560 43737686 ~ 43747147 (+) True G146063
TU167666 lncRNA downstream 294 43769456 ~ 43769718 (+) True G146092
TU167667 lncRNA downstream 1112 43770274 ~ 43770761 (+) True G146093
TU167669 lncRNA downstream 2550 43771712 ~ 43771946 (+) True G146095
TU167672 lncRNA downstream 5253 43774415 ~ 43774851 (+) True G146098
TU167673 lncRNA downstream 5859 43775021 ~ 43775867 (+) True G146099
XM_036949255.1 mRNA upstream 116955 43630480 ~ 43651752 (+) False LOC110490231
XM_021563634.2 mRNA downstream 177926 43947088 ~ 43950347 (+) False LOC110490316
XM_021563644.2 mRNA downstream 178772 43947934 ~ 43950347 (+) True LOC110490316
XM_021563656.2 mRNA downstream 185887 43955049 ~ 43960992 (+) True LOC110490326
XM_021563788.2 mRNA downstream 695812 44464974 ~ 44472924 (+) False LOC110490388
XM_021563780.2 mRNA downstream 696061 44465223 ~ 44472924 (+) False LOC110490388
TU167624 other upstream 37489 43730872 ~ 43731218 (+) True G146054
TU166008 other upstream 1202677 42510330 ~ 42566030 (+) True G144661
TU165213 other upstream 1799390 41968374 ~ 41969317 (+) False G143938
TU165214 other upstream 1799485 41968374 ~ 41969222 (+) True G143938
TU164559 other upstream 2227116 41539295 ~ 41541591 (+) True LOC110489834
TU167688 other downstream 30242 43799404 ~ 43799853 (+) True G146114
TU167748 other downstream 117434 43886596 ~ 43889609 (+) False G146165
TU167816 other downstream 227618 43996780 ~ 43997065 (+) True G146226
TU168471 other downstream 659991 44429153 ~ 44429393 (+) True G146841
TU169210 other downstream 1101638 44870800 ~ 44871500 (+) True G147510

Expression Profile


TU167665 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 4.
End of interactive chart.

TU167665 Expression in each Bioproject

Bar chart with 12 bars.
TU167665 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 80.
End of interactive chart.