RNA id: TU167669



Basic Information


Item Value
RNA id TU167669
length 235
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G146095
representative True

Chromosome Information


Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 43771712 ~ 43771946 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GCCAGGATCTGTcggaaccgccagccagccaggatctgccagagccatctACCtgcccgagctacccctcagtcccgagctacccctcagtccagtggggcccttggttaGGGTTACTAAGCcgaggtcggtggcgagggttGCCAATCTAAGGACGCGATGCATGtggactaagactttgttggagtggggtccacgtcccgcgccggagccgccaccgtggacagacgcccac

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU167667 lncRNA upstream 951 43770274 ~ 43770761 (+) True G146093
TU167666 lncRNA upstream 1994 43769456 ~ 43769718 (+) True G146092
TU167610 lncRNA upstream 4432 43766882 ~ 43767280 (+) True G146040
TU167653 lncRNA upstream 11303 43760101 ~ 43760409 (+) True G146083
TU167648 lncRNA upstream 16636 43754854 ~ 43755076 (+) True G146078
TU167672 lncRNA downstream 2469 43774415 ~ 43774851 (+) True G146098
TU167673 lncRNA downstream 3075 43775021 ~ 43775867 (+) True G146099
TU167679 lncRNA downstream 13388 43785334 ~ 43785538 (+) True G146105
TU167682 lncRNA downstream 18557 43790503 ~ 43790710 (+) True G146108
TU167684 lncRNA downstream 20766 43792712 ~ 43792936 (+) True G146110
XM_036949255.1 mRNA upstream 119960 43630480 ~ 43651752 (+) False LOC110490231
XM_021563634.2 mRNA downstream 175142 43947088 ~ 43950347 (+) False LOC110490316
XM_021563644.2 mRNA downstream 175988 43947934 ~ 43950347 (+) True LOC110490316
XM_021563656.2 mRNA downstream 183103 43955049 ~ 43960992 (+) True LOC110490326
XM_021563788.2 mRNA downstream 693028 44464974 ~ 44472924 (+) False LOC110490388
XM_021563780.2 mRNA downstream 693277 44465223 ~ 44472924 (+) False LOC110490388
TU167665 other upstream 2550 43768707 ~ 43769162 (+) True G146091
TU167624 other upstream 40494 43730872 ~ 43731218 (+) True G146054
TU166008 other upstream 1205682 42510330 ~ 42566030 (+) True G144661
TU165213 other upstream 1802395 41968374 ~ 41969317 (+) False G143938
TU167688 other downstream 27458 43799404 ~ 43799853 (+) True G146114
TU167748 other downstream 114650 43886596 ~ 43889609 (+) False G146165
TU167816 other downstream 224834 43996780 ~ 43997065 (+) True G146226
TU168471 other downstream 657207 44429153 ~ 44429393 (+) True G146841
TU169210 other downstream 1098854 44870800 ~ 44871500 (+) True G147510

Expression Profile