RNA id: TU167687



Basic Information


Item Value
RNA id TU167687
length 252
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G146113
representative True

Chromosome Information


Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 43798567 ~ 43798818 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CATAGAGACTTCAGTAGGATTATCTACACTTCAAACAGACTGCGAACAGACAGAGCACATCAAAGGGAAAAAGGGGAATACTTTAGTGACTTGCACACAAAACATCTGGAGACACCCTATTTTGTAGGTTTCATGTCCCAAATAGAAGGGAAGAAGTGATTATGAATTACTCGCTACCTCCTCCACGGTAGTGTGCAGAGGAGGTCAAAGTTCAGAGACCGATAGGGAAGCAGGGGATGTTGGGCTGGGGAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU167684 lncRNA upstream 5631 43792712 ~ 43792936 (+) True G146110
TU167682 lncRNA upstream 7857 43790503 ~ 43790710 (+) True G146108
TU167679 lncRNA upstream 13029 43785334 ~ 43785538 (+) True G146105
TU167673 lncRNA upstream 22700 43775021 ~ 43775867 (+) True G146099
TU167672 lncRNA upstream 23716 43774415 ~ 43774851 (+) True G146098
TU167704 lncRNA downstream 34698 43833516 ~ 43833738 (+) True G146130
TU167746 lncRNA downstream 88473 43887291 ~ 43888780 (+) True G146165
TU167753 lncRNA downstream 94518 43893336 ~ 43897240 (+) True G146168
TU167759 lncRNA downstream 98100 43896918 ~ 43917778 (+) True G146171
TU167790 lncRNA downstream 165751 43964569 ~ 43965697 (+) True G146201
XM_036949255.1 mRNA upstream 146815 43630480 ~ 43651752 (+) False LOC110490231
XM_021563634.2 mRNA downstream 148270 43947088 ~ 43950347 (+) False LOC110490316
XM_021563644.2 mRNA downstream 149116 43947934 ~ 43950347 (+) True LOC110490316
XM_021563656.2 mRNA downstream 156231 43955049 ~ 43960992 (+) True LOC110490326
XM_021563788.2 mRNA downstream 666156 44464974 ~ 44472924 (+) False LOC110490388
XM_021563780.2 mRNA downstream 666405 44465223 ~ 44472924 (+) False LOC110490388
TU167665 other upstream 29405 43768707 ~ 43769162 (+) True G146091
TU167624 other upstream 67349 43730872 ~ 43731218 (+) True G146054
TU166008 other upstream 1232537 42510330 ~ 42566030 (+) True G144661
TU165213 other upstream 1829250 41968374 ~ 41969317 (+) False G143938
TU167688 other downstream 586 43799404 ~ 43799853 (+) True G146114
TU167748 other downstream 87778 43886596 ~ 43889609 (+) False G146165
TU167816 other downstream 197962 43996780 ~ 43997065 (+) True G146226
TU168471 other downstream 630335 44429153 ~ 44429393 (+) True G146841
TU169210 other downstream 1071982 44870800 ~ 44871500 (+) True G147510

Expression Profile