RNA id: TU167688



Basic Information


Item Value
RNA id TU167688
length 450
RNA type TUCP
GC content 0.51
exon number 1
gene id G146114
representative True

Chromosome Information


Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 43799404 ~ 43799853 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CCCTATCTCCCAACCTTTTCACTAGCTACAACCTCTCccgcaacgtgatcaagacaaaggagatgattgtggactgtgattgttcctttgtgtccacatcaccaacaaactatcatggtccaaacacaccaagatagtcgtgaagagggcacggcaatacctattccccctcaggagactgaaaagatttggcatgggtcctcagatcctctaaAAGTTCTAGAGCTGaactatcgagagcatcctgacaggttgcatcaccgcctggtatggcatctgctcggcctccgaccgcaaggcactacagagggcagtgcgtacggcccagtacatcattggggccaagcttcctgccatccaggacctctataccaggcgatatCAGATGAAGGCCcccaaaaattgccaaagactccagtcacaatagtcatagactgttctctctgccac

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU167687 lncRNA upstream 586 43798567 ~ 43798818 (+) True G146113
TU167684 lncRNA upstream 6468 43792712 ~ 43792936 (+) True G146110
TU167682 lncRNA upstream 8694 43790503 ~ 43790710 (+) True G146108
TU167679 lncRNA upstream 13866 43785334 ~ 43785538 (+) True G146105
TU167673 lncRNA upstream 23537 43775021 ~ 43775867 (+) True G146099
TU167704 lncRNA downstream 33663 43833516 ~ 43833738 (+) True G146130
TU167746 lncRNA downstream 87438 43887291 ~ 43888780 (+) True G146165
TU167753 lncRNA downstream 93483 43893336 ~ 43897240 (+) True G146168
TU167759 lncRNA downstream 97065 43896918 ~ 43917778 (+) True G146171
TU167790 lncRNA downstream 164716 43964569 ~ 43965697 (+) True G146201
XM_036949255.1 mRNA upstream 147652 43630480 ~ 43651752 (+) False LOC110490231
XM_021563634.2 mRNA downstream 147235 43947088 ~ 43950347 (+) False LOC110490316
XM_021563644.2 mRNA downstream 148081 43947934 ~ 43950347 (+) True LOC110490316
XM_021563656.2 mRNA downstream 155196 43955049 ~ 43960992 (+) True LOC110490326
XM_021563788.2 mRNA downstream 665121 44464974 ~ 44472924 (+) False LOC110490388
XM_021563780.2 mRNA downstream 665370 44465223 ~ 44472924 (+) False LOC110490388
TU167665 other upstream 30242 43768707 ~ 43769162 (+) True G146091
TU167624 other upstream 68186 43730872 ~ 43731218 (+) True G146054
TU166008 other upstream 1233374 42510330 ~ 42566030 (+) True G144661
TU165213 other upstream 1830087 41968374 ~ 41969317 (+) False G143938
TU165214 other upstream 1830182 41968374 ~ 41969222 (+) True G143938
TU167748 other downstream 86743 43886596 ~ 43889609 (+) False G146165
TU167816 other downstream 196927 43996780 ~ 43997065 (+) True G146226
TU168471 other downstream 629300 44429153 ~ 44429393 (+) True G146841
TU169210 other downstream 1070947 44870800 ~ 44871500 (+) True G147510
TU169947 other downstream 1672229 45472082 ~ 45472629 (+) False G148191

Expression Profile


TU167688 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 3.
End of interactive chart.

TU167688 Expression in each Bioproject

Bar chart with 19 bars.
TU167688 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 60.
End of interactive chart.