RNA id: TU167746


Basic Information

Item Value
RNA id TU167746
length 1396
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G146165
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 43886596 ~ 43889609 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gttctgaaatctgcatagaaaactgtcctaattatatatgtattgggttgtgtatagaggtgacgttaaatagtggctgtgttttaacacgtaatggacacaattatggatgttggaaattcaatgagaatttcatacgaatgaatgaattatagatgaaccgaatctgcaagtaaggtcttgtggaggtgtggttatagatgaaccgaatctgcaagtaaggtcttgtggaggtgtggttatagatgaaccgaatctgcaagtaaggtcttgtggaggtgtggttatagatgaaccgaatctgcaagtaaggtcttgtggaggtgtggttatagttgaatgatagatgaaccggatctgcaagtaaaatctcctgttgatacatataacatcgaataggtcttgtggaggtgtggttggattgaatgaatctgcatgaaaaatgccctattaaaaaagctgtgtattatttaataggttttgtaagaggtgtagtcgagtagatacaggatatgtaagtttggccttccactagacagagatcgggaatgatgtggctattgcacatcaaacaataaacataagatgaaccagagttgacattccatgatttggagatgggggaaattaaattgaaagaaacgtttgtcgcggagtaggttgggatacgtaactgggctattatGCACACGTGCTGGtagacaaagccaccttagtatcgaatggccgtgcaattttgattgacagcagccgggccgaaatactgattttcgttttttttcattcctgttgatattgcctaaagtttaaaattattctgacaattgctatagaatcgctggaatttactgatataagttcataaaggaacttactgaattgtttctagaaagtatttaaataagccgCCGAGCTTAATACAGACTTTGTTTTACAGACGCTAAAAGCTACACACTGATTTTGGGGTTTttctattctatccatatttcctaaatatatagaattattctgacaattgctatagaatcgctcgaatttactgatataagttcataaaggaatttactgaattgtttacagaaagtatttaaataattcactgaacaactcttagttgtctagaaattctatcgatatttcctaaagagctagaattactctgaaaattgttatagaaccgcatatattcactgatatattgttccaaaaggaaatcgcagaatcatttatagaaaatacctaaacgaatcgctgaacaaattcaaataaaataccggtGAAATACacacgtggcgggcgtcacatattgataaccccctttgtctcgaccagggacaggctaagcatacaacgatagaaataaacaccacatagtaaggattgaatatacctaaat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU167704 lncRNA upstream 53553 43833516 ~ 43833738 (+) True G146130
TU167687 lncRNA upstream 88473 43798567 ~ 43798818 (+) True G146113
TU167684 lncRNA upstream 94355 43792712 ~ 43792936 (+) True G146110
TU167682 lncRNA upstream 96581 43790503 ~ 43790710 (+) True G146108
TU167679 lncRNA upstream 101753 43785334 ~ 43785538 (+) True G146105
TU167753 lncRNA downstream 4556 43893336 ~ 43897240 (+) True G146168
TU167759 lncRNA downstream 8138 43896918 ~ 43917778 (+) True G146171
TU167790 lncRNA downstream 75789 43964569 ~ 43965697 (+) True G146201
TU167810 lncRNA downstream 100372 43989152 ~ 43989351 (+) True G146221
TU167828 lncRNA downstream 125252 44014032 ~ 44014243 (+) True G146238
XM_036949255.1 mRNA upstream 235539 43630480 ~ 43651752 (+) False LOC110490231
XM_021563634.2 mRNA downstream 58308 43947088 ~ 43950347 (+) False LOC110490316
XM_021563644.2 mRNA downstream 59154 43947934 ~ 43950347 (+) True LOC110490316
XM_021563656.2 mRNA downstream 66269 43955049 ~ 43960992 (+) True LOC110490326
XM_021563788.2 mRNA downstream 576194 44464974 ~ 44472924 (+) False LOC110490388
XM_021563780.2 mRNA downstream 576443 44465223 ~ 44472924 (+) False LOC110490388
TU167688 other upstream 87438 43799404 ~ 43799853 (+) True G146114
TU167665 other upstream 118129 43768707 ~ 43769162 (+) True G146091
TU167624 other upstream 156073 43730872 ~ 43731218 (+) True G146054
TU166008 other upstream 1321261 42510330 ~ 42566030 (+) True G144661
TU165214 other upstream 1918069 41968374 ~ 41969222 (+) True G143938
TU167816 other downstream 108000 43996780 ~ 43997065 (+) True G146226
TU168471 other downstream 540373 44429153 ~ 44429393 (+) True G146841
TU169210 other downstream 982020 44870800 ~ 44871500 (+) True G147510
TU169947 other downstream 1583302 45472082 ~ 45472629 (+) False G148191
TU169948 other downstream 1583965 45472745 ~ 45492379 (+) True G148191

Expression Profile