Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00028313 |
| length | 867 |
| RNA type | mRNA |
| GC content | 0.48 |
| exon number | 3 |
| gene id | XLOC_014245 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007130.7 |
| NCBI id | CM002903.2 |
| chromosome length | 48449771 |
| location | 41419519 ~ 41467041 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0006355 | regulation of transcription, DNA-templated | biological_process |
| GO:0006357 | regulation of transcription by RNA polymerase II | biological_process |
| GO:0030154 | cell differentiation | biological_process |
| GO:0007275 | multicellular organism development | biological_process |
| GO:0001841 | neural tube formation | biological_process |
| GO:0035141 | medial fin morphogenesis | biological_process |
| GO:0033339 | pectoral fin development | biological_process |
| GO:0009790 | embryo development | biological_process |
| GO:0005634 | nucleus | cellular_component |
| GO:0043565 | sequence-specific DNA binding | molecular_function |
| GO:0003677 | DNA binding | molecular_function |
| GO:0000978 | RNA polymerase II cis-regulatory region sequence-specific DNA binding | molecular_function |
| GO:0000981 | DNA-binding transcription factor activity, RNA polymerase II-specific | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-980526-448 | Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within medial fin morphogenesis; neural tube formation; and pectoral fin development. Predicted to be located in nucleus. Is expressed in brain; head; and otic vesicle. Orthologous to human DLX6 (distal-less homeobox 6). |
| ensembl_id | ENSDART00000149799 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00030030 | lncRNA | upstream | 180991 | 41233808 ~ 41238528 (+) | True | XLOC_014244 |
| TCONS_00030029 | lncRNA | upstream | 228000 | 41187812 ~ 41191519 (+) | True | XLOC_014243 |
| TCONS_00030028 | lncRNA | upstream | 682535 | 40692428 ~ 40736984 (+) | True | XLOC_014234 |
| TCONS_00028294 | lncRNA | upstream | 1078890 | 40337564 ~ 40340629 (+) | True | XLOC_014231 |
| TCONS_00030026 | lncRNA | upstream | 1086425 | 40328712 ~ 40333094 (+) | True | XLOC_014230 |
| TCONS_00030031 | lncRNA | downstream | 370827 | 41837751 ~ 41841201 (+) | False | XLOC_014252 |
| TCONS_00030032 | lncRNA | downstream | 371147 | 41838071 ~ 41841201 (+) | True | XLOC_014252 |
| TCONS_00030033 | lncRNA | downstream | 660999 | 42127923 ~ 42140654 (+) | True | XLOC_014255 |
| TCONS_00028338 | lncRNA | downstream | 763737 | 42230661 ~ 42231640 (+) | False | XLOC_014259 |
| TCONS_00028346 | lncRNA | downstream | 1039050 | 42505974 ~ 42516134 (+) | False | XLOC_014264 |
| TCONS_00028310 | mRNA | upstream | 237268 | 41169996 ~ 41182251 (+) | False | XLOC_014242 |
| TCONS_00028311 | mRNA | upstream | 241284 | 41173386 ~ 41178235 (+) | True | XLOC_014242 |
| TCONS_00028307 | mRNA | upstream | 258576 | 41075488 ~ 41160943 (+) | False | XLOC_014241 |
| TCONS_00028309 | mRNA | upstream | 277344 | 41132429 ~ 41142175 (+) | True | XLOC_014241 |
| TCONS_00028308 | mRNA | upstream | 290146 | 41080240 ~ 41129373 (+) | False | XLOC_014241 |
| TCONS_00028315 | mRNA | downstream | 13066 | 41479990 ~ 41499645 (+) | True | XLOC_014246 |
| TCONS_00028316 | mRNA | downstream | 43032 | 41509956 ~ 41513809 (+) | False | XLOC_014247 |
| TCONS_00028317 | mRNA | downstream | 43076 | 41510000 ~ 41513802 (+) | True | XLOC_014247 |
| TCONS_00028318 | mRNA | downstream | 53968 | 41520892 ~ 41524391 (+) | False | XLOC_014248 |
| TCONS_00028319 | mRNA | downstream | 54063 | 41520987 ~ 41540572 (+) | True | XLOC_014248 |
| TCONS_00028303 | other | upstream | 460903 | 40958500 ~ 40958616 (+) | True | XLOC_014238 |
| TCONS_00028293 | other | upstream | 1074782 | 40337554 ~ 40344737 (+) | False | XLOC_014231 |
| TCONS_00028276 | other | upstream | 1292755 | 40116262 ~ 40126764 (+) | False | XLOC_014226 |
| TCONS_00028268 | other | upstream | 1364128 | 40025928 ~ 40055391 (+) | False | XLOC_014223 |
| TCONS_00028266 | other | upstream | 1544572 | 39874831 ~ 39874947 (+) | True | XLOC_014221 |
| TCONS_00028333 | other | downstream | 722066 | 42188990 ~ 42189104 (+) | True | XLOC_014257 |
| TCONS_00028342 | other | downstream | 870393 | 42337317 ~ 42337431 (+) | True | XLOC_014261 |
| TCONS_00028353 | other | downstream | 1265764 | 42732688 ~ 42735285 (+) | False | XLOC_014270 |
| TCONS_00028365 | other | downstream | 1448495 | 42915419 ~ 42915541 (+) | True | XLOC_014274 |
| TCONS_00028379 | other | downstream | 1610820 | 43077744 ~ 43077879 (+) | True | XLOC_014279 |
