RNA id: TU169037


Basic Information

Item Value
RNA id TU169037
length 1270
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G147355
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 44639799 ~ 44645208 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cagacagagacagagacagagacacagacagacagacagagacacagacagacagacagacagacagacagacagagacacagacagacagagacacagaaagacagacagacagagacacagacagacagacagacagagacaccttcagacagagacacagacagacagacagacagacagacagaaagacagacagacagacagacggagacacagacagacagacagacagacagacagacagacagacagagacagagacacagacagacagacagacagacatacagacagagacagagacacagacagacagacagacagacagacagacacagagacagagacacagacagacagacagacagacagacagagacagacagacagacaaagacacagacagacagacagacagacagaccagacagaccagacagacagacagacagacagacagacagacagacagacagacagacagagacacagacagacagacagacagacagacagagacacagacagacagagacacagacagacagagacacagacagacagacagacagacagacagacagacagacagagacagagacacagacagacagagacacagacacagacacagagacacacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagagacagagacagagacacagacagacagacagagacacagacagacagacagacagacagacagacagacagagacacagacagacagagacacagaaagacagactgacagagacacagacagacagacagacagacagacagacagacagagacacagacagacagagacacagacagacagacagacagacagacagaaagacagacagacagacagacggagacacagacagacagacagacagacagacagacagacagacagagacagagacacagacagacagacagacagagagacagacagacagacagacagacatacagacagagacagagacacagacagacagacagacagacagacagacagacagacagacacagagacagagacacagacagacagacagacagacagacagagacagacagacagacaaagacacagacagacagacagacagacagacagaccagacagaccagacagacagacagacagacagacagacagacagacagatagacagacagacagacagacagacagaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU169035 lncRNA upstream 11425 44628119 ~ 44628374 (+) True G147353
TU169025 lncRNA upstream 22654 44615062 ~ 44617145 (+) True G147349
TU169020 lncRNA upstream 26880 44609708 ~ 44612919 (+) True G147347
TU169022 lncRNA upstream 27915 44611222 ~ 44611884 (+) True G147348
TU169019 lncRNA upstream 31772 44607673 ~ 44608027 (+) True G147346
TU169045 lncRNA downstream 8204 44653412 ~ 44653661 (+) True G147363
TU169046 lncRNA downstream 17587 44662795 ~ 44670099 (+) False G147364
TU169047 lncRNA downstream 24436 44669644 ~ 44672122 (+) True G147364
TU169052 lncRNA downstream 27090 44672298 ~ 44672558 (+) True G147368
TU169054 lncRNA downstream 27798 44673006 ~ 44675964 (+) True G147369
XM_021563838.2 mRNA upstream 85820 44551163 ~ 44553979 (+) False LOC110490437
XM_021563829.2 mRNA upstream 85820 44551164 ~ 44553979 (+) True LOC110490437
XM_036949444.1 mRNA upstream 166875 44465761 ~ 44472924 (+) False LOC110490388
XM_021563975.2 mRNA downstream 558101 45203309 ~ 45255843 (+) False LOC110490546
XM_036949670.1 mRNA downstream 558112 45203320 ~ 45255843 (+) True LOC110490546
XM_021564034.2 mRNA downstream 798865 45444073 ~ 45468845 (+) True tsg101a
XM_036949734.1 mRNA downstream 950795 45596003 ~ 46132114 (+) True brsk2a
XR_005036955.1 mRNA downstream 1053989 45699197 ~ 45755983 (+) True LOC118940395
TU168471 other upstream 210406 44429153 ~ 44429393 (+) True G146841
TU167816 other upstream 642734 43996780 ~ 43997065 (+) True G146226
TU167748 other upstream 750190 43886596 ~ 43889609 (+) False G146165
TU167688 other upstream 839946 43799404 ~ 43799853 (+) True G146114
TU167665 other upstream 870637 43768707 ~ 43769162 (+) True G146091
TU169210 other downstream 225592 44870800 ~ 44871500 (+) True G147510
TU169947 other downstream 826874 45472082 ~ 45472629 (+) False G148191
TU169948 other downstream 827537 45472745 ~ 45492379 (+) True G148191
TU172245 other downstream 2336511 46981719 ~ 46985226 (+) True uevld
TU172952 other downstream 2852740 47497948 ~ 47547579 (+) True G150997

Expression Profile