RNA id: TU169052



Basic Information


Item Value
RNA id TU169052
length 261
lncRNA type inter_gene
GC content 0.50
exon number 1
gene id G147368
representative True

Chromosome Information


Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 44672298 ~ 44672558 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


gacagagacagacagacagacagacagacatacagacagacagacaggcagagacagagacacagacagacagagacacagacacagacacagagacagagacagacagacagacagacagacagacagacagacagacagacagagacagagacagagacagagacacagacagacagacagagacacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagac

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU169047 lncRNA upstream 176 44669644 ~ 44672122 (+) True G147364
TU169046 lncRNA upstream 2199 44662795 ~ 44670099 (+) False G147364
TU169045 lncRNA upstream 18637 44653412 ~ 44653661 (+) True G147363
TU169038 lncRNA upstream 20374 44641661 ~ 44651924 (+) True G147356
TU169037 lncRNA upstream 27090 44639799 ~ 44645208 (+) True G147355
TU169054 lncRNA downstream 448 44673006 ~ 44675964 (+) True G147369
TU169082 lncRNA downstream 59226 44731784 ~ 44738473 (+) False G147394
TU169083 lncRNA downstream 59226 44731784 ~ 44738473 (+) True G147394
TU169205 lncRNA downstream 191662 44864220 ~ 44864612 (+) True G147505
TU169206 lncRNA downstream 192628 44865186 ~ 44865585 (+) True G147506
XM_021563838.2 mRNA upstream 118319 44551163 ~ 44553979 (+) False LOC110490437
XM_021563829.2 mRNA upstream 118319 44551164 ~ 44553979 (+) True LOC110490437
XM_036949444.1 mRNA upstream 199374 44465761 ~ 44472924 (+) False LOC110490388
XM_021563975.2 mRNA downstream 530751 45203309 ~ 45255843 (+) False LOC110490546
XM_036949670.1 mRNA downstream 530762 45203320 ~ 45255843 (+) True LOC110490546
XM_021564034.2 mRNA downstream 771515 45444073 ~ 45468845 (+) True tsg101a
XM_036949734.1 mRNA downstream 923445 45596003 ~ 46132114 (+) True brsk2a
XR_005036955.1 mRNA downstream 1026639 45699197 ~ 45755983 (+) True LOC118940395
TU168471 other upstream 242905 44429153 ~ 44429393 (+) True G146841
TU167816 other upstream 675233 43996780 ~ 43997065 (+) True G146226
TU167748 other upstream 782689 43886596 ~ 43889609 (+) False G146165
TU167688 other upstream 872445 43799404 ~ 43799853 (+) True G146114
TU167665 other upstream 903136 43768707 ~ 43769162 (+) True G146091
TU169210 other downstream 198242 44870800 ~ 44871500 (+) True G147510
TU169947 other downstream 799524 45472082 ~ 45472629 (+) False G148191
TU169948 other downstream 800187 45472745 ~ 45492379 (+) True G148191
TU172245 other downstream 2309161 46981719 ~ 46985226 (+) True uevld
TU172952 other downstream 2825390 47497948 ~ 47547579 (+) True G150997

Expression Profile