RNA id: TU169083


Basic Information

Item Value
RNA id TU169083
length 481
lncRNA type antisense_over
GC content 0.43
exon number 2
gene id G147394
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 44731784 ~ 44738473 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tatgagctctatcacaaccctgtgactctcagatcgattcagtgtctaaccatgaattctctgagagcccccttccacatttcaaatgaggtcctttatagtaaagacacacacacaggataagacagcatagacataattcatcgttcagctttgtctcctttcccaaaccccagaaccataaaccaatcctccatatcaacaggcatatatcaaattgtcatttagatgcaaccaactctaaatacaacctcctggacaagctcacggagaggagggtgaggctataggttaagatagaaacaacataagagggagcatagaatgattccagacactgcaaccttcctttccccactatgggaaaggtagagagtgaaagatatgtttacacatgatgacactttgacctctcccctctcagcggcccaggcaacttagttttgacatagaacagataactgcaacctcaccacagaat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU169054 lncRNA upstream 55820 44673006 ~ 44675964 (+) True G147369
TU169052 lncRNA upstream 59226 44672298 ~ 44672558 (+) True G147368
TU169047 lncRNA upstream 59662 44669644 ~ 44672122 (+) True G147364
TU169046 lncRNA upstream 61685 44662795 ~ 44670099 (+) False G147364
TU169045 lncRNA upstream 78123 44653412 ~ 44653661 (+) True G147363
TU169205 lncRNA downstream 125747 44864220 ~ 44864612 (+) True G147505
TU169206 lncRNA downstream 126713 44865186 ~ 44865585 (+) True G147506
TU169244 lncRNA downstream 181945 44920418 ~ 44926833 (+) True G147543
TU169245 lncRNA downstream 182917 44921390 ~ 44927741 (+) True G147544
TU169246 lncRNA downstream 185305 44923778 ~ 44930276 (+) True G147545
XM_021563838.2 mRNA upstream 177805 44551163 ~ 44553979 (+) False LOC110490437
XM_021563829.2 mRNA upstream 177805 44551164 ~ 44553979 (+) True LOC110490437
XM_036949444.1 mRNA upstream 258860 44465761 ~ 44472924 (+) False LOC110490388
XM_021563975.2 mRNA downstream 464836 45203309 ~ 45255843 (+) False LOC110490546
XM_036949670.1 mRNA downstream 464847 45203320 ~ 45255843 (+) True LOC110490546
XM_021564034.2 mRNA downstream 705600 45444073 ~ 45468845 (+) True tsg101a
XM_036949734.1 mRNA downstream 857530 45596003 ~ 46132114 (+) True brsk2a
XR_005036955.1 mRNA downstream 960724 45699197 ~ 45755983 (+) True LOC118940395
TU168471 other upstream 302391 44429153 ~ 44429393 (+) True G146841
TU167816 other upstream 734719 43996780 ~ 43997065 (+) True G146226
TU167748 other upstream 842175 43886596 ~ 43889609 (+) False G146165
TU167688 other upstream 931931 43799404 ~ 43799853 (+) True G146114
TU167665 other upstream 962622 43768707 ~ 43769162 (+) True G146091
TU169210 other downstream 132327 44870800 ~ 44871500 (+) True G147510
TU169947 other downstream 733609 45472082 ~ 45472629 (+) False G148191
TU169948 other downstream 734272 45472745 ~ 45492379 (+) True G148191
TU172245 other downstream 2243246 46981719 ~ 46985226 (+) True uevld
TU172952 other downstream 2759475 47497948 ~ 47547579 (+) True G150997