RNA id: TU169948


Basic Information

Item Value
RNA id TU169948
length 1246
RNA type TUCP
GC content 0.50
exon number 4
gene id G148191
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 45472082 ~ 45492379 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TATGGAGTGAGCAGGCCAGCACTAACATCTAATTCAAACCTGTCAATGACTTCGCACAATTCTAGAGTAATGATCAAGTCACTAGATCATGTTCAACCAAattactccctccctcccggcCTCCTCTTGTACCGGGGTTGGAGACGACCAGCAGGATAGCGTTGGGGCTGTACTTGACGATCTGGGGGATGATGAACTTGAAGATGTTGACGTTACGCTGCACCAGGTTCAGACGACTCTCGCCCTCCTGCTGACGAGCACCGGCGGTGACCACCACCACCTTGGAATGGGCGGTTGTACTGTAGTCTTATCGCCCACGATCTTGTGGGTCTTGCAGAAGAGGCTGCCATGCTGCAGGTCCATGACCTCACCCTTCAGCTTTTCCTCCATCACATCAATCAGGCACAGCTCATCGCACAGGTCCTGAGCAGGACGCTGACTGCGGAGGCCATGCCAACCATGCCGACGCCAACCACTGTCACCTTGCTTCGGGAGCCAACGGGCTCACCAGCCAACACATGGGTGATCAGCTTCTCCTTAGTGGTCATCtgagagacCTTGTAAGGTTTCGTGAAAGTGACGTGGAAACAACACTGAAATGCGAGTTGGAATGTCTTTGGCTGGCCTCTTCCCTGGCTGGATGCAGCTTTTCTATGGCActggtgtgtgtgagggaggttCCCGGTATTTAAGCAGCAGAGCGGTGCACGGTAAACGCTGCGTGATTACATGACACACTGGGAGGGTCCCGGGTGTCTCGTGTTAAATGTCATGTCCATGCAGAGCGAATGTGCTATGGGATGGAGAAGCCACTCACTGTGGCACAAGGAACGGGGTGGGGTCAGCTGTGGGCAGGCTCACCAACGACTAGCACAAAGCTCAGACACCAATGCATACCGTACATGCCACTaagggtctcttcacagtccccaagttcaGAACGGACTCTGAAAAACGCACAGTAGTACACAgcgacatgactacatggaactctattccacatcaagtaactcatgcaagcagtaaattcggatatttttttgttgtaaaacTACACCTTATAGAACAATGTAAAGCATATACTGGAAAAAATGCAGCAGCTAATAGGGACtcttaataaaaataaaacaatttttaGGCACTAACTCCGCCATTCTTAGTTGGACAAAGCCTATGTGGAAATGAATTATGTTTTTGGATTAACAcagaccacacaactactgaccacaaccatacAATTAGGTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU169888 lncRNA upstream 182593 45289913 ~ 45290152 (+) True G148134
TU169883 lncRNA upstream 190083 45282402 ~ 45282662 (+) True G148129
TU169881 lncRNA upstream 193522 45278652 ~ 45279223 (+) True G148127
TU169771 lncRNA upstream 282655 45189773 ~ 45190090 (+) True G148030
TU169770 lncRNA upstream 283382 45189157 ~ 45189363 (+) True G148029
TU170015 lncRNA downstream 18560 45510939 ~ 45512458 (+) True G148252
TU170017 lncRNA downstream 22367 45514746 ~ 45519843 (+) True G148254
TU170217 lncRNA downstream 47251 45539630 ~ 45539986 (+) True G148415
TU170405 lncRNA downstream 257851 45750230 ~ 45801517 (+) True G148584
TU170451 lncRNA downstream 307542 45799921 ~ 45800947 (+) True G148621
XM_021564034.2 mRNA upstream 3900 45444073 ~ 45468845 (+) True tsg101a
XM_021563975.2 mRNA upstream 216902 45203309 ~ 45255843 (+) False LOC110490546
XM_036949670.1 mRNA upstream 216902 45203320 ~ 45255843 (+) True LOC110490546
XM_021563838.2 mRNA upstream 918766 44551163 ~ 44553979 (+) False LOC110490437
XM_036949734.1 mRNA downstream 103624 45596003 ~ 46132114 (+) True brsk2a
XR_005036955.1 mRNA downstream 206818 45699197 ~ 45755983 (+) True LOC118940395
XM_021564096.2 mRNA downstream 1473757 46966136 ~ 46980755 (+) True spty2d1
XM_036949756.1 mRNA downstream 1489307 46981686 ~ 47007672 (+) False uevld
XM_036933601.1 mRNA downstream 1641836 47134215 ~ 47205441 (+) False cpt1ab
TU169947 other upstream 116 45472082 ~ 45472629 (+) False G148191
TU169210 other upstream 601245 44870800 ~ 44871500 (+) True G147510
TU168471 other upstream 1043352 44429153 ~ 44429393 (+) True G146841
TU167816 other upstream 1475680 43996780 ~ 43997065 (+) True G146226
TU167748 other upstream 1583136 43886596 ~ 43889609 (+) False G146165
TU172245 other downstream 1489340 46981719 ~ 46985226 (+) True uevld
TU172952 other downstream 2005569 47497948 ~ 47547579 (+) True G150997
TU174225 other downstream 3064403 48556782 ~ 48557686 (+) True G152167
TU176287 other downstream 4606037 50098416 ~ 50100474 (+) True LOC110491026
TU177155 other downstream 5673036 51165415 ~ 51167174 (+) True G154859

Expression Profile