RNA id: TU170798


Basic Information

Item Value
RNA id TU170798
length 216
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G148959
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 46302382 ~ 46302597 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtaaggacatcagggataacattgtagacctgcacaaggctgggatgggctacaggacaataggcaagcagcttggtgagaaggcaacaactgttggcgcaattattagaaaatggaagaatttcaagatgacggtcaatcaccctcggtctgggactCCATGCaaaatctcacctcgtggggcatcaatgatcatgaggaaggtgagggatcagc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU170405 lncRNA upstream 500865 45750230 ~ 45801517 (+) True G148584
TU170451 lncRNA upstream 501435 45799921 ~ 45800947 (+) True G148621
TU170217 lncRNA upstream 762396 45539630 ~ 45539986 (+) True G148415
TU170017 lncRNA upstream 782539 45514746 ~ 45519843 (+) True G148254
TU170015 lncRNA upstream 789924 45510939 ~ 45512458 (+) True G148252
TU170806 lncRNA downstream 15453 46318050 ~ 46321610 (+) True G148967
TU170808 lncRNA downstream 20059 46322656 ~ 46337873 (+) False G148968
TU170809 lncRNA downstream 20059 46322656 ~ 46337873 (+) False G148968
TU170807 lncRNA downstream 32871 46335468 ~ 46337873 (+) True G148968
TU170859 lncRNA downstream 83403 46386000 ~ 46386199 (+) True G149016
XM_036949734.1 mRNA upstream 170268 45596003 ~ 46132114 (+) True brsk2a
XR_005036955.1 mRNA upstream 546399 45699197 ~ 45755983 (+) True LOC118940395
XM_021564034.2 mRNA upstream 833537 45444073 ~ 45468845 (+) True tsg101a
XM_021563975.2 mRNA upstream 1046539 45203309 ~ 45255843 (+) False LOC110490546
XM_036949670.1 mRNA upstream 1046539 45203320 ~ 45255843 (+) True LOC110490546
XM_021564096.2 mRNA downstream 663539 46966136 ~ 46980755 (+) True spty2d1
XM_036949756.1 mRNA downstream 679089 46981686 ~ 47007672 (+) False uevld
XM_036933601.1 mRNA downstream 831618 47134215 ~ 47205441 (+) False cpt1ab
XM_036933595.1 mRNA downstream 832248 47134845 ~ 47205441 (+) False cpt1ab
XM_036933608.1 mRNA downstream 832248 47134845 ~ 47205441 (+) False cpt1ab
TU169948 other upstream 810003 45472745 ~ 45492379 (+) True G148191
TU169947 other upstream 829753 45472082 ~ 45472629 (+) False G148191
TU169210 other upstream 1430882 44870800 ~ 44871500 (+) True G147510
TU168471 other upstream 1872989 44429153 ~ 44429393 (+) True G146841
TU167816 other upstream 2305317 43996780 ~ 43997065 (+) True G146226
TU172245 other downstream 679122 46981719 ~ 46985226 (+) True uevld
TU172952 other downstream 1195351 47497948 ~ 47547579 (+) True G150997
TU174225 other downstream 2254185 48556782 ~ 48557686 (+) True G152167
TU176287 other downstream 3795819 50098416 ~ 50100474 (+) True LOC110491026
TU177155 other downstream 4862818 51165415 ~ 51167174 (+) True G154859

Expression Profile