RNA id: TU170806


Basic Information

Item Value
RNA id TU170806
length 3478
lncRNA type antisense_over
GC content 0.40
exon number 2
gene id G148967
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 46318050 ~ 46321610 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTCTCTACAAAACAATTTCACAGAAATTACCTTGGAATGTATATTCCTGTTTTTAacttatatatgtatatattttcatGTTTCATTTTTAAATAGTCCTGTGTCAATGCTAAATGATGTACAGTAGACCTTTCTttagagggggagaaaaggaagGGGCAAATAAGAGGGACTTTAACTATCATAGTCAATAACCAATCATTAGCAAGCCCATATATGGCCTTCTTGAAGCCTTCCAGTCCATCCCGTCACAATAAGTACTGGGTAAGTAAACAAACTGGCCTCCAGTCATTCTGATGGGAGCAGGTGGCTTCCTGTTACACAACAGAAGCTGCCAGTGTCTCTCCATCACACCTCACATACCCTTTatccctctttttcgctctctctcacaatcccgtgttctttctccccctctctctctctctctcattctctctgtatCTTGGAACttgtttgttcagtgtatcaAGCTTTTTGAGTAGGATGTAACATTTATAGAACGTTCCAGATAGAAAAGTAATGTACAGAACTGACACGATTCCATCATTCTACCTGACAGGACATCCTTTTTGCTCTACAAAATGTATTTCTATCTGACACTTCTGTAACGTCACCCCTCTTGAAAAAGCCCACTGGTATTATCTTGATTCCCCTGCTTCTCCCCTCTTCACTACCTAAACTATAGACTCCCACCAAACCCAGGATAAAAGGCACACATTGTAAAATGGCCTTGCACTACCAAATCTCACTCAAATAAAATCTGTTTGACTTTATGTAGATCCACATCTTCAGGGAAGAGCTCCAGTGCTCTGAGTAActcattctgtctctgtgtgcGTTTCTCTGTTAGTATTCTTATGTAGCTAAAGAAATATGAAGCTTCATCCCGAAACCCAGTCATACTTTGATTAACCAAGTTCAGCTCAGCATATGTTTAAAACATCACAGGCCTTAAagcataaatgtaaaaaaaaaaaaaatgtttcaaagTCTACCACTTATCACTCACAGTTCACTGCTCCCTTCCCAGTGCACTTCTTGGTTCGTTCCAGTTATATCTGAGGGTTTTTCAGAGAACTCTGGAGAATGGAGCGTACCATCAGCAGGATCAACGAGGGATCAGGGGATAAACCATGTGCCGATTCAGTGTCTGAGAGAAATAATAGTACACCCAAACCCAATATTAGTGCCTTTATTCAACCCACTCATCACTGTGACCTGAGATAGGTAGGCATCTGTTTTCTGAAATACCTCTGTAGGGGATAGTAGATCAACCTGGAATATTTTAATAAAATGTATCAAGTAATAAGTCAAGTAATTCATTAGTGTTGGCTAGCCTGACCATGAACACAGCACAATATCATCTGTAAATAGtaaggggagagtggggtaagttgagccttTCTTTACATTCTGCATCACTCCGTGAAGGAAATATAgcattctttctaacaaagatatctacatacatttcaggatgttgtgtaatCCTGGAAATAAGCAGAATTCATGCAAACAttacagttatgaaaacatagcttgtccaaaaaaagtgGTCTCTCTTGGCACAAATTACCCCAGGTATCGGGCAAGTTGAGCcacaggacagggtaagttaggCCACCTACACATTTTTGCAATGATTTAAATATtactaatacatttttaaaactatgtctatctttatttcccaaacacaattcaacacaatcacttTTCTGTCTTTAAATAATTTTAAGCATATTTTAATACAAGCTTAAGTTAACACCTAACAGACATGTTGTacataggccaggccctgttgttacctcatatcccagtgaTAATGCCTTGAATTATGGCTGAACTTACCCCAAagtaaacattttgactatattagcccacacagctacaattatgcactttcatgctaggtttaggacctcatattgaagcgtATATAGACCCCAAATGATTTAACAATCTTAAAATTATCCACATTGGTTTaaatacaagcatcatgaaacctctaacacaatgaattcatttgacttggtgaattttttttttgttggcctaattgcttaccactttttgatgtggtttcttccttcataGACTCCATGAagtgatgacctcttcctaaatgtTAGGTCAAATTATTCATTtggtgtatggtttcctagaaataagggtggctcaacttacccctttgaCTCAACTTACTCCACTCTCCCCTAAAATTCTTCCAACAAAACAGCAGCGAGGCAACGCACAATGTTTGGAAAGATACAAGAAATCCATGTCAATgccagaaaagagagagaaacagagagagatagcaaaagcgagagagagagattgtagagaaagagagcaatagataagaaaataaaaacaaaaaacgagagagaaagacagaccaaAAGAAAGCAGGATAGACTGTGAAACGAAGTACGTTTTGCAAAGCACTTTGATAAATCTGATGCCTCGCTGTGGATCCCCCACTCCATACGGTCCAGTGTCTGTGTCCTCCTCCCATAGAACTGTACACATAACAGAGCTTATATTTAATATGCAACAATTTAGGGtaaactttcccaaaattcccaggttggAAGATGTTAAAAGATATCCGTAATCAGGAGTAAATAAGCAGGACATTTGGGAAAGCTGCACATACCGCATCATAGGCCTCTATAGTACATATGAAGCACCCCGGTTAGGTTTATATGAAGAAGCACATCAGGTAGACCCACTACACACTGTTACTTTCAACACCCAGACATGTCGTTGCAGTACTAATATCTGAAATTTGACACCCGAGTGACGGAACGCGTTTCCGGAACGAGTACTGTTCGCACGTACCTGaacacaaacaaataaacatactGTCATCAACACAAAGTCCTTCTAACGTTCCTCAGACATCTCCTCACATGGATGTTTTTGTAGAAAATCTTAGGTTGTCTTTACAAATGTCTCGCTAGAAAATAAAATATGCTTCCtctgaacaaaacaaacaaaatacaaataaacaacaTTTTTTAGTCTGTCAGGTAACATTGCACCAAAAAAGAAAAAGACATTGCCTCTACATTGAGTTCTGTTAGTGAGGCGAAAGGTCAAGTCTATCCGGGTAGACGTCAACACCAACATAAAAAACAGATTCCCTCGGTTTTCCCCCTCAATGTCCTCCATTGACGGAAAAAACATCCTCAGGGAAAAGATATTCCTCAGAGAAGCAGGGAAGGGCATCCCTGAAAAGTGCCTATCTAAAAAAGGCAAAGTCAGGCAGTAAGTAAGCTTATTCAGGGTCTCTCCTCACACACAGTGGAGCTGCAGGTATAGGCCATGTGTTTTGGGTCCTCCTTAGCTAACCCCCTCCCTTAGGGGTTTTCTTGTTCTGAGCATTCCACATGCCCCTTTTGGAGTGGTAGTAGTGGAAGAAGttcctcagtctcagtctctccaCCTCGAGACCGTTCTGTAGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU170798 lncRNA upstream 15453 46302382 ~ 46302597 (+) True G148959
TU170405 lncRNA upstream 516533 45750230 ~ 45801517 (+) True G148584
TU170451 lncRNA upstream 517103 45799921 ~ 45800947 (+) True G148621
TU170217 lncRNA upstream 778064 45539630 ~ 45539986 (+) True G148415
TU170017 lncRNA upstream 798207 45514746 ~ 45519843 (+) True G148254
TU170808 lncRNA downstream 1046 46322656 ~ 46337873 (+) False G148968
TU170809 lncRNA downstream 1046 46322656 ~ 46337873 (+) False G148968
TU170807 lncRNA downstream 13858 46335468 ~ 46337873 (+) True G148968
TU170859 lncRNA downstream 64390 46386000 ~ 46386199 (+) True G149016
TU170864 lncRNA downstream 70993 46392603 ~ 46392907 (+) True G149021
XM_036949734.1 mRNA upstream 185936 45596003 ~ 46132114 (+) True brsk2a
XR_005036955.1 mRNA upstream 562067 45699197 ~ 45755983 (+) True LOC118940395
XM_021564034.2 mRNA upstream 849205 45444073 ~ 45468845 (+) True tsg101a
XM_021563975.2 mRNA upstream 1062207 45203309 ~ 45255843 (+) False LOC110490546
XM_036949670.1 mRNA upstream 1062207 45203320 ~ 45255843 (+) True LOC110490546
XM_021564096.2 mRNA downstream 644526 46966136 ~ 46980755 (+) True spty2d1
XM_036949756.1 mRNA downstream 660076 46981686 ~ 47007672 (+) False uevld
XM_036933601.1 mRNA downstream 812605 47134215 ~ 47205441 (+) False cpt1ab
XM_036933595.1 mRNA downstream 813235 47134845 ~ 47205441 (+) False cpt1ab
XM_036933608.1 mRNA downstream 813235 47134845 ~ 47205441 (+) False cpt1ab
TU169948 other upstream 825671 45472745 ~ 45492379 (+) True G148191
TU169947 other upstream 845421 45472082 ~ 45472629 (+) False G148191
TU169210 other upstream 1446550 44870800 ~ 44871500 (+) True G147510
TU168471 other upstream 1888657 44429153 ~ 44429393 (+) True G146841
TU167816 other upstream 2320985 43996780 ~ 43997065 (+) True G146226
TU172245 other downstream 660109 46981719 ~ 46985226 (+) True uevld
TU172952 other downstream 1176338 47497948 ~ 47547579 (+) True G150997
TU174225 other downstream 2235172 48556782 ~ 48557686 (+) True G152167
TU176287 other downstream 3776806 50098416 ~ 50100474 (+) True LOC110491026
TU177155 other downstream 4843805 51165415 ~ 51167174 (+) True G154859

Expression Profile