RNA id: TU170809


Basic Information

Item Value
RNA id TU170809
length 411
lncRNA type antisense_over
GC content 0.42
exon number 3
gene id G148968
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 46322656 ~ 46337873 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gagcgagagagagagagagagagtgtcacgttctgacctctatttcctttgttttgcttttatttagtatggtcagggcgtgagttgggtgggcagtctatgtttgtttttctatgttttggggcagttctatgttttcggcctagtatggttctcaatcagaggcaggtgtcattagttgtctctgattgagaatcatacttaggtagcctgggtttcactgtttgtttgtgggtgattgttcctgtctttgtgtagtattcaccagataggctgtattaggttttgagttctcacgtttcttgttttttcgttagtttgttcatgtatagtgtcgtgaataaaatacaatgaacaaccaccacgctgcgctttggtccgcctcaacttcacaacaagagaatcgttaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU170806 lncRNA upstream 1046 46318050 ~ 46321610 (+) True G148967
TU170798 lncRNA upstream 20059 46302382 ~ 46302597 (+) True G148959
TU170405 lncRNA upstream 521139 45750230 ~ 45801517 (+) True G148584
TU170451 lncRNA upstream 521709 45799921 ~ 45800947 (+) True G148621
TU170217 lncRNA upstream 782670 45539630 ~ 45539986 (+) True G148415
TU170859 lncRNA downstream 48127 46386000 ~ 46386199 (+) True G149016
TU170864 lncRNA downstream 54730 46392603 ~ 46392907 (+) True G149021
TU170868 lncRNA downstream 63719 46401592 ~ 46401968 (+) True G149025
TU170870 lncRNA downstream 65429 46403302 ~ 46403515 (+) True G149027
TU170873 lncRNA downstream 68607 46406480 ~ 46406706 (+) True G149030
XM_036949734.1 mRNA upstream 190542 45596003 ~ 46132114 (+) True brsk2a
XR_005036955.1 mRNA upstream 566673 45699197 ~ 45755983 (+) True LOC118940395
XM_021564034.2 mRNA upstream 853811 45444073 ~ 45468845 (+) True tsg101a
XM_021563975.2 mRNA upstream 1066813 45203309 ~ 45255843 (+) False LOC110490546
XM_036949670.1 mRNA upstream 1066813 45203320 ~ 45255843 (+) True LOC110490546
XM_021564096.2 mRNA downstream 628263 46966136 ~ 46980755 (+) True spty2d1
XM_036949756.1 mRNA downstream 643813 46981686 ~ 47007672 (+) False uevld
XM_036933601.1 mRNA downstream 796342 47134215 ~ 47205441 (+) False cpt1ab
XM_036933595.1 mRNA downstream 796972 47134845 ~ 47205441 (+) False cpt1ab
XM_036933608.1 mRNA downstream 796972 47134845 ~ 47205441 (+) False cpt1ab
TU169948 other upstream 830277 45472745 ~ 45492379 (+) True G148191
TU169947 other upstream 850027 45472082 ~ 45472629 (+) False G148191
TU169210 other upstream 1451156 44870800 ~ 44871500 (+) True G147510
TU168471 other upstream 1893263 44429153 ~ 44429393 (+) True G146841
TU167816 other upstream 2325591 43996780 ~ 43997065 (+) True G146226
TU172245 other downstream 643846 46981719 ~ 46985226 (+) True uevld
TU172952 other downstream 1160075 47497948 ~ 47547579 (+) True G150997
TU174225 other downstream 2218909 48556782 ~ 48557686 (+) True G152167
TU176287 other downstream 3760543 50098416 ~ 50100474 (+) True LOC110491026
TU177155 other downstream 4827542 51165415 ~ 51167174 (+) True G154859