RNA id: TU170859


Basic Information

Item Value
RNA id TU170859
length 200
lncRNA type intronic
GC content 0.51
exon number 1
gene id G149016
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 46386000 ~ 46386199 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agtgtgtcaaatcggagggtctgttgtccgggcctctggcagtctctatgggggtgccacagggttcaattcttggaccgactctcttctctgtatacagcaattatgtcgctcttgctgctggtgagtctctgatccacctctacgcagacgacagcattctgtatacttctggcccttttttggacactgtgttaaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU170808 lncRNA upstream 48127 46322656 ~ 46337873 (+) False G148968
TU170809 lncRNA upstream 48127 46322656 ~ 46337873 (+) False G148968
TU170807 lncRNA upstream 48127 46335468 ~ 46337873 (+) True G148968
TU170806 lncRNA upstream 64390 46318050 ~ 46321610 (+) True G148967
TU170798 lncRNA upstream 83403 46302382 ~ 46302597 (+) True G148959
TU170864 lncRNA downstream 6404 46392603 ~ 46392907 (+) True G149021
TU170868 lncRNA downstream 15393 46401592 ~ 46401968 (+) True G149025
TU170870 lncRNA downstream 17103 46403302 ~ 46403515 (+) True G149027
TU170873 lncRNA downstream 20281 46406480 ~ 46406706 (+) True G149030
TU170878 lncRNA downstream 24676 46410875 ~ 46411078 (+) True G149035
XM_036949734.1 mRNA upstream 253886 45596003 ~ 46132114 (+) True brsk2a
XR_005036955.1 mRNA upstream 630017 45699197 ~ 45755983 (+) True LOC118940395
XM_021564034.2 mRNA upstream 917155 45444073 ~ 45468845 (+) True tsg101a
XM_021563975.2 mRNA upstream 1130157 45203309 ~ 45255843 (+) False LOC110490546
XM_036949670.1 mRNA upstream 1130157 45203320 ~ 45255843 (+) True LOC110490546
XM_021564096.2 mRNA downstream 579937 46966136 ~ 46980755 (+) True spty2d1
XM_036949756.1 mRNA downstream 595487 46981686 ~ 47007672 (+) False uevld
XM_036933601.1 mRNA downstream 748016 47134215 ~ 47205441 (+) False cpt1ab
XM_036933595.1 mRNA downstream 748646 47134845 ~ 47205441 (+) False cpt1ab
XM_036933608.1 mRNA downstream 748646 47134845 ~ 47205441 (+) False cpt1ab
TU169948 other upstream 893621 45472745 ~ 45492379 (+) True G148191
TU169947 other upstream 913371 45472082 ~ 45472629 (+) False G148191
TU169210 other upstream 1514500 44870800 ~ 44871500 (+) True G147510
TU168471 other upstream 1956607 44429153 ~ 44429393 (+) True G146841
TU167816 other upstream 2388935 43996780 ~ 43997065 (+) True G146226
TU172245 other downstream 595520 46981719 ~ 46985226 (+) True uevld
TU172952 other downstream 1111749 47497948 ~ 47547579 (+) True G150997
TU174225 other downstream 2170583 48556782 ~ 48557686 (+) True G152167
TU176287 other downstream 3712217 50098416 ~ 50100474 (+) True LOC110491026
TU177155 other downstream 4779216 51165415 ~ 51167174 (+) True G154859

Expression Profile