RNA id: TU171003


Basic Information

Item Value
RNA id TU171003
length 241
lncRNA type intronic
GC content 0.34
exon number 1
gene id G149154
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 46568219 ~ 46568459 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cattagggatattatttggaatttgtctgcgttgctctttcctgtggatttctgaacataatgcgccaaacaaacggaggtattttggatataaaaatattctttatggaacaaaaggaacatttgttgtgtaactgggagtctcatgagtgaaaacatccgaagatcatcaaaggtaagttattaatttgattgcttttctgattttcgtgacctagctacttaatgcttagtgtacata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU171000 lncRNA upstream 4017 46563954 ~ 46564202 (+) True G149151
TU170993 lncRNA upstream 12958 46555023 ~ 46555261 (+) True G149144
TU170945 lncRNA upstream 69280 46491577 ~ 46498939 (+) False G149098
TU170946 lncRNA upstream 69280 46491683 ~ 46498939 (+) True G149098
TU170892 lncRNA upstream 134852 46424221 ~ 46433367 (+) True G149049
TU171007 lncRNA downstream 3893 46572352 ~ 46572611 (+) True G149158
TU171019 lncRNA downstream 13953 46582412 ~ 46634067 (+) True G149167
TU172058 lncRNA downstream 222529 46790988 ~ 46791374 (+) True G150150
TU172095 lncRNA downstream 243498 46811957 ~ 46812248 (+) True G150186
TU172119 lncRNA downstream 273845 46842304 ~ 46842593 (+) True G150210
XM_036949734.1 mRNA upstream 436105 45596003 ~ 46132114 (+) True brsk2a
XR_005036955.1 mRNA upstream 812236 45699197 ~ 45755983 (+) True LOC118940395
XM_021564034.2 mRNA upstream 1099374 45444073 ~ 45468845 (+) True tsg101a
XM_021563975.2 mRNA upstream 1312376 45203309 ~ 45255843 (+) False LOC110490546
XM_036949670.1 mRNA upstream 1312376 45203320 ~ 45255843 (+) True LOC110490546
XM_021564096.2 mRNA downstream 397677 46966136 ~ 46980755 (+) True spty2d1
XM_036949756.1 mRNA downstream 413227 46981686 ~ 47007672 (+) False uevld
XM_036933601.1 mRNA downstream 565756 47134215 ~ 47205441 (+) False cpt1ab
XM_036933595.1 mRNA downstream 566386 47134845 ~ 47205441 (+) False cpt1ab
XM_036933608.1 mRNA downstream 566386 47134845 ~ 47205441 (+) False cpt1ab
TU169948 other upstream 1075840 45472745 ~ 45492379 (+) True G148191
TU169947 other upstream 1095590 45472082 ~ 45472629 (+) False G148191
TU169210 other upstream 1696719 44870800 ~ 44871500 (+) True G147510
TU168471 other upstream 2138826 44429153 ~ 44429393 (+) True G146841
TU167816 other upstream 2571154 43996780 ~ 43997065 (+) True G146226
TU172245 other downstream 413260 46981719 ~ 46985226 (+) True uevld
TU172952 other downstream 929489 47497948 ~ 47547579 (+) True G150997
TU174225 other downstream 1988323 48556782 ~ 48557686 (+) True G152167
TU176287 other downstream 3529957 50098416 ~ 50100474 (+) True LOC110491026
TU177155 other downstream 4596956 51165415 ~ 51167174 (+) True G154859

Expression Profile