RNA id: TU171007


Basic Information

Item Value
RNA id TU171007
length 260
lncRNA type intronic
GC content 0.47
exon number 1
gene id G149158
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 46572352 ~ 46572611 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATAGAGGAGAGAGCGGCCATGCCAGACATTTTTATCTCAGTAAATAAACTATGCATTCTGCCAGTAAAGCCTGTGGCGTCAGGGGACATATTTCCCTCCTTCCTACTCACACCTTTTTAttttccttctctttttctctctctgtcttttaacTTCCCTGGTCATCCTCAGACCCGGGGAGAAGTCAGGCACCATCTCTCATCTCAGACaaggtgtgtgtgcatatgtgcatatgtgcgtgtgtgctgcttgcgtatgtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU171003 lncRNA upstream 3893 46568219 ~ 46568459 (+) True G149154
TU171000 lncRNA upstream 8150 46563954 ~ 46564202 (+) True G149151
TU170993 lncRNA upstream 17091 46555023 ~ 46555261 (+) True G149144
TU170945 lncRNA upstream 73413 46491577 ~ 46498939 (+) False G149098
TU170946 lncRNA upstream 73413 46491683 ~ 46498939 (+) True G149098
TU171019 lncRNA downstream 9801 46582412 ~ 46634067 (+) True G149167
TU172058 lncRNA downstream 218377 46790988 ~ 46791374 (+) True G150150
TU172095 lncRNA downstream 239346 46811957 ~ 46812248 (+) True G150186
TU172119 lncRNA downstream 269693 46842304 ~ 46842593 (+) True G150210
TU172120 lncRNA downstream 270280 46842891 ~ 46843203 (+) True G150211
XM_036949734.1 mRNA upstream 440238 45596003 ~ 46132114 (+) True brsk2a
XR_005036955.1 mRNA upstream 816369 45699197 ~ 45755983 (+) True LOC118940395
XM_021564034.2 mRNA upstream 1103507 45444073 ~ 45468845 (+) True tsg101a
XM_021563975.2 mRNA upstream 1316509 45203309 ~ 45255843 (+) False LOC110490546
XM_036949670.1 mRNA upstream 1316509 45203320 ~ 45255843 (+) True LOC110490546
XM_021564096.2 mRNA downstream 393525 46966136 ~ 46980755 (+) True spty2d1
XM_036949756.1 mRNA downstream 409075 46981686 ~ 47007672 (+) False uevld
XM_036933601.1 mRNA downstream 561604 47134215 ~ 47205441 (+) False cpt1ab
XM_036933595.1 mRNA downstream 562234 47134845 ~ 47205441 (+) False cpt1ab
XM_036933608.1 mRNA downstream 562234 47134845 ~ 47205441 (+) False cpt1ab
TU169948 other upstream 1079973 45472745 ~ 45492379 (+) True G148191
TU169947 other upstream 1099723 45472082 ~ 45472629 (+) False G148191
TU169210 other upstream 1700852 44870800 ~ 44871500 (+) True G147510
TU168471 other upstream 2142959 44429153 ~ 44429393 (+) True G146841
TU167816 other upstream 2575287 43996780 ~ 43997065 (+) True G146226
TU172245 other downstream 409108 46981719 ~ 46985226 (+) True uevld
TU172952 other downstream 925337 47497948 ~ 47547579 (+) True G150997
TU174225 other downstream 1984171 48556782 ~ 48557686 (+) True G152167
TU176287 other downstream 3525805 50098416 ~ 50100474 (+) True LOC110491026
TU177155 other downstream 4592804 51165415 ~ 51167174 (+) True G154859

Expression Profile