RNA id: TU172136


Basic Information

Item Value
RNA id TU172136
length 3458
lncRNA type antisense_over
GC content 0.40
exon number 2
gene id G150227
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 46872295 ~ 46877077 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTTCGTTTAAgcttttatttaaaaatgtacaACTGTAACAGTACAAAATTGCATTTTAAACAAATAGGAGAATGGTTTAATTAAAGTTTGACTTTTGTTGCATTAAGGGGAGCTCATGCTTCCCCTCATTTCAAATCTTGATCTATCAGTGATCCCTTCTGCAGCTTAGACTGTCATTttatttaggttaaaagttggttgacaaaaaaaatccaaaattCCTGTACGTTGATGagtttttgcaaatccaattaaTCTTCtacattgattcaacatcatcaaaagAAAAAACATTGCAGTTTTTTTAACGTTctcggaacaatttgagaacatgactttaaatggAACCaggaggaaacctgtaggaaaatGTTATgcctgaagtactgaaattcccaacgaagaacgttgtttcttaacgaagttgaatttttttttaacattcccaatgtcaaaccagttggagaacattcctagaacatgaccaaaattgaaatgaaatgtaaccatgtttgaacttttaggaaacattctgttaaagtaatgaagtACCTTGAAGTTCCTTAAaagtgctgagaatgttccaaactatcctgcaccattcccagaaagttgtggaaaagttgtatgcaaaataaacATAGGACAATTActctctcaccaagctctaagaaacatatggttctcagaacattatgtgctagttGGGAAAACGTTACCTAAAAATGGCCTGGCATTAATCAAAGGATTTTGAGAAAATATTACAAAATAGGAATACGCCGGTATGATGTACATTTAGCCAATGTTCAAGCAAAATGATAGTTCACAGCAATTCTGCCACGGCCCTAGAGGGAGCTCGACACACacctacacgcacgcacacacaaataacATGCAACAATGTATCTGTTTTCTAAAATGTCTTAAATACACACTGACATTTTTTCAGTCAATATGCTTCAAACAGACAGCACAATAACTCAGCAAAGATGTCCCTATAGCTGGTGCAACAGATACTATGACAGATAAGTGTCATAGCTGCATATCTATTTAGGGGGATATAACCAATTGGGATTGAGTGGTATAATTGTTCCCTTGTGCTAATGAAACCATTGgccagtcttctctctcttttttggcTGTGTTTGGACCCTAAGGGACCAGGGTGTCCTAGGGCTGTGTTCTTCTCTGAAGGCCCAAGCACTGCAGACAAAACAAGGACTGGCTTCAGCCAACATGTCCTTTTCGTAACACTTTATATGGCCACAGGCACACAGTTGgtagctgaaaatgttccagcaATAAGGGCACCACCAGCCTTCTTCTAATAACCAAACCAGCAGGAGCTGGGGGTATGAAGTGTGACCTGAAGGAAGCgtgtatatgtggtgtgtgtttgtgcgtgttcaGGGTAACATAAACAGTAAAGAAGGAACACTGTGAGATGCCTCAGGTACagagcgtacacacacacacacacacacacacacacacacacagatctaagAAAAATGTTCCCCTTAGGGACCAGCCTTTTGAGTGATCAGTATGACTGTGGTAAAATACTAGAGCAGGCGCTCTCAAATGATCTCTCTCacatgctgaccaaaccggcCACGTTGCGTGCGCAAGTGTTGAGAGAAATAAATGtagacatacatgttattcaataattTCATCGAAACTGCTCACGCACGTCATCTGCATAGCCAggcactaaaatagaacttggttttATTTGGCGCGGCAAGTCATGCCTCTCCCATCTCCGCCTTGGTTTTTAGGATCATACAAACCCACGtgagtgattgaaagatgaagCAGGTCCACACTCCAGCCTAGTTGATGGAGGTCATGAGCCTTAATGCCGGTTGTCAACAGTCATATAAAATCCAAAGAGGAATGAATGAGGAGAGATGAATCAAAGAAAACATACTAGGTTTTCCCTTTTACCTTTTGATTCATTGTCGGAGTAGAGAACACACGATTTTGTGGGACTCAAAATGggtacaaaattctacaaagatccagCAGATAGAAGGACCATATGGATTTCAGTTACAATAGCAACCCAATGttcatatcccaggacaaatgatTTAGCAACAGCTAGCTAGGTAAAAGTCcacaaattctctctctctctgtgtgtgtgcgtagacATTCACAGCAATTTTCATAGGCTCATagacacaggagagaggatgtattctAATAGGAGTGTGGCGAGCAGAAGTACAAAAGGCAGTTTGTCTTAAGTGAAAGTGAAGAGACTAAAATCAGTAAAAAAAAGGAGGGTGGATGTGCTCCAGACTTTGAGAACAGCACCTAAATACATGAGAAGAGACAGCAGTTATGGGACACAACCTCCCCCATAACAAGTCGAGATGTGCAAACTTATTCACTATAACAACTCCCTTTTCAGAGATAAATTAAATAATGGTGATAAAATAGTTGCAAAGACAATATGCCACAGGAAACACATCCATTTGAATTTGCAATATTGGACCACATTATACTGTAAATGGGGTGGAGAGGGCAGCCAATGACTGGGGGGCAGAAGGAAGATGTGCTATTATTGTAGCAGGCCATGAGAAATCACACTCATCTGTAGGTTATATAGTATGAATCCTCTAACCTAatacgcacgcgcacgcacacgcacccacacccacacacaaacctTGACATGGTGATCTGTATGGTCATCTGTACCAACATCCTAGGCAGTGAGGTGGGGGAGTTGTCGTGCACTACTCTCTAGTAACTAGGACGTATCTACGAGAACTGTAGGGCAGTAGTTGagggttaaaagtagtgcacttgtcTCCATGGTAACTAGGGTCTTTGACTGTCCCACTAGCCATGGGGCAGGCTGGTGGTAGTACACTAGTTTCCATGGTAACAAGGGTGTGCGAATGCCACGCTACAACCAAAGTAGGGGGTTTGGGGGTAACTGTCTCTGGAATATGTCCATGACAAAAACAAGGGGGATTGGCTGCCCCTATCACATCTTCTTGATCACGTGACGcgacctcgctctctcctcttcatGCCATCTTCCTTGCCGTCTCCACATCCTGGCACTCGACGGCGGAGAGCGCGATCAGCATCTGCGCGGCGTAGTAGGTGGCCATGATAACGGCGCGTGAGTGCGGCACAGGGAAGCAGAACTTGTTAACGGCAATAGTGAGGTCGGAGACCATGAAGAGTACAGCGCCCAGACATGCCGACATCTTGGTCCAGGTCCACAGGTCATTGGCCAACTGGAGGCCGGCCACAGCCCGCCAGCCCATGAAGCCGATCAGGGCGATATAGACCCCCACCAGGTAGGTGAAGGGGCCTGAGAGGTAGGGGTAGAGCAGGGCGTAGCTCACGGCCGAAATGGCGCCAATCACCAGGCCGGCAAGCGGGTTCAGGGGCTTCATACCGAAGGCCGAGGAGTAGAGGATGTGGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU172134 lncRNA upstream 14073 46857894 ~ 46858222 (+) True G150225
TU172120 lncRNA upstream 29092 46842891 ~ 46843203 (+) True G150211
TU172119 lncRNA upstream 29702 46842304 ~ 46842593 (+) True G150210
TU172095 lncRNA upstream 60047 46811957 ~ 46812248 (+) True G150186
TU172058 lncRNA upstream 80921 46790988 ~ 46791374 (+) True G150150
TU172227 lncRNA downstream 54024 46931101 ~ 46931324 (+) True G150313
TU172231 lncRNA downstream 64104 46941181 ~ 46941449 (+) True G150317
TU172233 lncRNA downstream 65779 46942856 ~ 46943090 (+) True G150319
TU172238 lncRNA downstream 76535 46953612 ~ 46953847 (+) True G150324
TU172258 lncRNA downstream 129262 47006339 ~ 47006712 (+) True G150339
XM_036949734.1 mRNA upstream 740181 45596003 ~ 46132114 (+) True brsk2a
XR_005036955.1 mRNA upstream 1116312 45699197 ~ 45755983 (+) True LOC118940395
XM_021564034.2 mRNA upstream 1403450 45444073 ~ 45468845 (+) True tsg101a
XM_021563975.2 mRNA upstream 1616452 45203309 ~ 45255843 (+) False LOC110490546
XM_036949670.1 mRNA upstream 1616452 45203320 ~ 45255843 (+) True LOC110490546
XM_021564096.2 mRNA downstream 89059 46966136 ~ 46980755 (+) True spty2d1
XM_036949756.1 mRNA downstream 104609 46981686 ~ 47007672 (+) False uevld
XM_036933601.1 mRNA downstream 257138 47134215 ~ 47205441 (+) False cpt1ab
XM_036933595.1 mRNA downstream 257768 47134845 ~ 47205441 (+) False cpt1ab
XM_036933608.1 mRNA downstream 257768 47134845 ~ 47205441 (+) False cpt1ab
TU169948 other upstream 1379916 45472745 ~ 45492379 (+) True G148191
TU169947 other upstream 1399666 45472082 ~ 45472629 (+) False G148191
TU169210 other upstream 2000795 44870800 ~ 44871500 (+) True G147510
TU168471 other upstream 2442902 44429153 ~ 44429393 (+) True G146841
TU167816 other upstream 2875230 43996780 ~ 43997065 (+) True G146226
TU172245 other downstream 104642 46981719 ~ 46985226 (+) True uevld
TU172952 other downstream 620871 47497948 ~ 47547579 (+) True G150997
TU174225 other downstream 1679705 48556782 ~ 48557686 (+) True G152167
TU176287 other downstream 3221339 50098416 ~ 50100474 (+) True LOC110491026
TU177155 other downstream 4288338 51165415 ~ 51167174 (+) True G154859

Expression Profile