RNA id: TU172231


Basic Information

Item Value
RNA id TU172231
length 269
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G150317
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 46941181 ~ 46941449 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cctccagagttcctctgtggaggacaaccatttctgcagcactccgccaatcaggcctttattatgggagagtggtcagacggaagctactcctaAGAAAAGGGCACtggacagcctgcttggagtttgccaaaaggcacctaaatgaatcttagaccatgagaaacaagattctctggtctgatgaaaccaagattgaactctttggcttgaatgtgaagcgtcacgtttggaggaaacctggcaccgtccctacggtgaagcatggt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU172227 lncRNA upstream 9857 46931101 ~ 46931324 (+) True G150313
TU172136 lncRNA upstream 64104 46872295 ~ 46877077 (+) True G150227
TU172134 lncRNA upstream 82959 46857894 ~ 46858222 (+) True G150225
TU172120 lncRNA upstream 97978 46842891 ~ 46843203 (+) True G150211
TU172119 lncRNA upstream 98588 46842304 ~ 46842593 (+) True G150210
TU172233 lncRNA downstream 1407 46942856 ~ 46943090 (+) True G150319
TU172238 lncRNA downstream 12163 46953612 ~ 46953847 (+) True G150324
TU172258 lncRNA downstream 64890 47006339 ~ 47006712 (+) True G150339
TU172397 lncRNA downstream 272649 47214098 ~ 47220529 (+) True G150467
TU172408 lncRNA downstream 285936 47227385 ~ 47230109 (+) True G150478
XM_036949734.1 mRNA upstream 809067 45596003 ~ 46132114 (+) True brsk2a
XR_005036955.1 mRNA upstream 1185198 45699197 ~ 45755983 (+) True LOC118940395
XM_021564034.2 mRNA upstream 1472336 45444073 ~ 45468845 (+) True tsg101a
XM_021563975.2 mRNA upstream 1685338 45203309 ~ 45255843 (+) False LOC110490546
XM_036949670.1 mRNA upstream 1685338 45203320 ~ 45255843 (+) True LOC110490546
XM_021564096.2 mRNA downstream 24687 46966136 ~ 46980755 (+) True spty2d1
XM_036949756.1 mRNA downstream 40237 46981686 ~ 47007672 (+) False uevld
XM_036933601.1 mRNA downstream 192766 47134215 ~ 47205441 (+) False cpt1ab
XM_036933595.1 mRNA downstream 193396 47134845 ~ 47205441 (+) False cpt1ab
XM_036933608.1 mRNA downstream 193396 47134845 ~ 47205441 (+) False cpt1ab
TU169948 other upstream 1448802 45472745 ~ 45492379 (+) True G148191
TU169947 other upstream 1468552 45472082 ~ 45472629 (+) False G148191
TU169210 other upstream 2069681 44870800 ~ 44871500 (+) True G147510
TU168471 other upstream 2511788 44429153 ~ 44429393 (+) True G146841
TU167816 other upstream 2944116 43996780 ~ 43997065 (+) True G146226
TU172245 other downstream 40270 46981719 ~ 46985226 (+) True uevld
TU172952 other downstream 556499 47497948 ~ 47547579 (+) True G150997
TU174225 other downstream 1615333 48556782 ~ 48557686 (+) True G152167
TU176287 other downstream 3156967 50098416 ~ 50100474 (+) True LOC110491026
TU177155 other downstream 4223966 51165415 ~ 51167174 (+) True G154859

Expression Profile