RNA id: TU172238


Basic Information

Item Value
RNA id TU172238
length 236
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G150324
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 46953612 ~ 46953847 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttctttatccccttacactgtgtacaagacagtagttttggaattgttagttagattacttgttattactgcattgtcggaactagaagcacaagcatttccctacactcgcattaacatctgctaaccatgtgtatgtgacaaataaaatttgatttgatttgagctgccagagccgcctgtcagccaggagctgccagagccgcctgtcagccaggagctgccagatccggatg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU172233 lncRNA upstream 10522 46942856 ~ 46943090 (+) True G150319
TU172231 lncRNA upstream 12163 46941181 ~ 46941449 (+) True G150317
TU172227 lncRNA upstream 22288 46931101 ~ 46931324 (+) True G150313
TU172136 lncRNA upstream 76535 46872295 ~ 46877077 (+) True G150227
TU172134 lncRNA upstream 95390 46857894 ~ 46858222 (+) True G150225
TU172258 lncRNA downstream 52492 47006339 ~ 47006712 (+) True G150339
TU172397 lncRNA downstream 260251 47214098 ~ 47220529 (+) True G150467
TU172408 lncRNA downstream 273538 47227385 ~ 47230109 (+) True G150478
TU172418 lncRNA downstream 292799 47246646 ~ 47246955 (+) True G150488
TU172496 lncRNA downstream 393423 47347270 ~ 47347545 (+) True G150564
XM_036949734.1 mRNA upstream 821498 45596003 ~ 46132114 (+) True brsk2a
XR_005036955.1 mRNA upstream 1197629 45699197 ~ 45755983 (+) True LOC118940395
XM_021564034.2 mRNA upstream 1484767 45444073 ~ 45468845 (+) True tsg101a
XM_021563975.2 mRNA upstream 1697769 45203309 ~ 45255843 (+) False LOC110490546
XM_036949670.1 mRNA upstream 1697769 45203320 ~ 45255843 (+) True LOC110490546
XM_021564096.2 mRNA downstream 12289 46966136 ~ 46980755 (+) True spty2d1
XM_036949756.1 mRNA downstream 27839 46981686 ~ 47007672 (+) False uevld
XM_036933601.1 mRNA downstream 180368 47134215 ~ 47205441 (+) False cpt1ab
XM_036933595.1 mRNA downstream 180998 47134845 ~ 47205441 (+) False cpt1ab
XM_036933608.1 mRNA downstream 180998 47134845 ~ 47205441 (+) False cpt1ab
TU169948 other upstream 1461233 45472745 ~ 45492379 (+) True G148191
TU169947 other upstream 1480983 45472082 ~ 45472629 (+) False G148191
TU169210 other upstream 2082112 44870800 ~ 44871500 (+) True G147510
TU168471 other upstream 2524219 44429153 ~ 44429393 (+) True G146841
TU167816 other upstream 2956547 43996780 ~ 43997065 (+) True G146226
TU172245 other downstream 27872 46981719 ~ 46985226 (+) True uevld
TU172952 other downstream 544101 47497948 ~ 47547579 (+) True G150997
TU174225 other downstream 1602935 48556782 ~ 48557686 (+) True G152167
TU176287 other downstream 3144569 50098416 ~ 50100474 (+) True LOC110491026
TU177155 other downstream 4211568 51165415 ~ 51167174 (+) True G154859

Expression Profile