RNA id: TU172258


Basic Information

Item Value
RNA id TU172258
length 312
lncRNA type intronic
GC content 0.55
exon number 2
gene id G150339
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 47006339 ~ 47006712 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGTTATGCATCGCTTCCCAAATGCCgctgcccttgcagagcaaggggaacaactacttcaaggtctcagagcgagtgacgtccacagactgactgaaacggggagggactacctgggCTTGTCCAATGAGAAAAGCTTATTTTTGCTTTCCATTGCAAAATGTATAAAAAGCATTTTTTGTTGCATGCAATCTAGATCCCTCGAGAAACCACACTTTACTATATACACCTCAGCTCAAGGAGATGTGTATATAGAGGGTTTCCTGACCAAAATGCACTGCTGTCATGTTTCTCATCTTGTGCTCTGTGCCGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU172238 lncRNA upstream 52492 46953612 ~ 46953847 (+) True G150324
TU172233 lncRNA upstream 63249 46942856 ~ 46943090 (+) True G150319
TU172231 lncRNA upstream 64890 46941181 ~ 46941449 (+) True G150317
TU172227 lncRNA upstream 75015 46931101 ~ 46931324 (+) True G150313
TU172136 lncRNA upstream 129262 46872295 ~ 46877077 (+) True G150227
TU172397 lncRNA downstream 207386 47214098 ~ 47220529 (+) True G150467
TU172408 lncRNA downstream 220673 47227385 ~ 47230109 (+) True G150478
TU172418 lncRNA downstream 239934 47246646 ~ 47246955 (+) True G150488
TU172496 lncRNA downstream 340558 47347270 ~ 47347545 (+) True G150564
TU172498 lncRNA downstream 343109 47349821 ~ 47350035 (+) True G150566
XM_021564096.2 mRNA upstream 25584 46966136 ~ 46980755 (+) True spty2d1
XM_036949734.1 mRNA upstream 874225 45596003 ~ 46132114 (+) True brsk2a
XR_005036955.1 mRNA upstream 1250356 45699197 ~ 45755983 (+) True LOC118940395
XM_021564034.2 mRNA upstream 1537494 45444073 ~ 45468845 (+) True tsg101a
XM_021563975.2 mRNA upstream 1750496 45203309 ~ 45255843 (+) False LOC110490546
XM_036933601.1 mRNA downstream 127503 47134215 ~ 47205441 (+) False cpt1ab
XM_036933595.1 mRNA downstream 128133 47134845 ~ 47205441 (+) False cpt1ab
XM_036933608.1 mRNA downstream 128133 47134845 ~ 47205441 (+) False cpt1ab
NM_001246330.1 mRNA downstream 154220 47160932 ~ 47203551 (+) True cpt1ab
NM_001124697.1 mRNA downstream 361468 47368180 ~ 47373699 (+) True igf2b
TU172245 other upstream 21113 46981719 ~ 46985226 (+) True uevld
TU169948 other upstream 1513960 45472745 ~ 45492379 (+) True G148191
TU169947 other upstream 1533710 45472082 ~ 45472629 (+) False G148191
TU169210 other upstream 2134839 44870800 ~ 44871500 (+) True G147510
TU168471 other upstream 2576946 44429153 ~ 44429393 (+) True G146841
TU172952 other downstream 491236 47497948 ~ 47547579 (+) True G150997
TU174225 other downstream 1550070 48556782 ~ 48557686 (+) True G152167
TU176287 other downstream 3091704 50098416 ~ 50100474 (+) True LOC110491026
TU177155 other downstream 4158703 51165415 ~ 51167174 (+) True G154859
TU177860 other downstream 4315084 51321796 ~ 51322433 (+) True LOC110501653

Expression Profile