RNA id: TU172418


Basic Information

Item Value
RNA id TU172418
length 310
lncRNA type antisense_over
GC content 0.54
exon number 1
gene id G150488
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 47246646 ~ 47246955 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCCCTGTGGGGCTACGGGGAGGCTGAGCCAATAGGCCTCAGTGCCGTCCAGCAGGGACTTGTGGAACTGGGTGGTGTCCACGCTCAGGAACGGGGACAGGGTGATGGAAATGTTTAGAAGCTTGATCAGTGAGAGGTCCCTGAAGTCCCTGGTCTGTCTCTTGGATGTCCCTCTTTTCCTGCTGGCGAGGTAGTCTTGGtcctgtagggagagagaaagagatattgGAGCAGAAGACTGGAAGAGAGACAATGCAGGATATGAACTGGGAACTGAAGAAGACCATGTCGGTCCAAACACTGTGATCATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU172408 lncRNA upstream 16537 47227385 ~ 47230109 (+) True G150478
TU172397 lncRNA upstream 26117 47214098 ~ 47220529 (+) True G150467
TU172258 lncRNA upstream 239934 47006339 ~ 47006712 (+) True G150339
TU172238 lncRNA upstream 292799 46953612 ~ 46953847 (+) True G150324
TU172233 lncRNA upstream 303556 46942856 ~ 46943090 (+) True G150319
TU172496 lncRNA downstream 100315 47347270 ~ 47347545 (+) True G150564
TU172498 lncRNA downstream 102866 47349821 ~ 47350035 (+) True G150566
TU172508 lncRNA downstream 118710 47365665 ~ 47366117 (+) True G150576
TU172489 lncRNA downstream 128533 47375488 ~ 47377174 (+) True G150557
TU172838 lncRNA downstream 146308 47393263 ~ 47393541 (+) True G150890
XM_036933601.1 mRNA upstream 41205 47134215 ~ 47205441 (+) False cpt1ab
XM_036933595.1 mRNA upstream 41205 47134845 ~ 47205441 (+) False cpt1ab
XM_036933608.1 mRNA upstream 41205 47134845 ~ 47205441 (+) False cpt1ab
NM_001246330.1 mRNA upstream 43095 47160932 ~ 47203551 (+) True cpt1ab
XM_036949756.1 mRNA upstream 238974 46981686 ~ 47007672 (+) False uevld
NM_001124697.1 mRNA downstream 121225 47368180 ~ 47373699 (+) True igf2b
XM_036949781.1 mRNA downstream 780454 48027409 ~ 48133974 (+) False osbpl5
XM_036949784.1 mRNA downstream 780507 48027462 ~ 48133974 (+) False osbpl5
XM_036949787.1 mRNA downstream 780507 48027462 ~ 48133974 (+) False osbpl5
XM_036949788.1 mRNA downstream 780507 48027462 ~ 48133974 (+) False osbpl5
TU172245 other upstream 261420 46981719 ~ 46985226 (+) True uevld
TU169948 other upstream 1754267 45472745 ~ 45492379 (+) True G148191
TU169947 other upstream 1774017 45472082 ~ 45472629 (+) False G148191
TU169210 other upstream 2375146 44870800 ~ 44871500 (+) True G147510
TU168471 other upstream 2817253 44429153 ~ 44429393 (+) True G146841
TU172952 other downstream 250993 47497948 ~ 47547579 (+) True G150997
TU174225 other downstream 1309827 48556782 ~ 48557686 (+) True G152167
TU176287 other downstream 2851461 50098416 ~ 50100474 (+) True LOC110491026
TU177155 other downstream 3918460 51165415 ~ 51167174 (+) True G154859
TU177860 other downstream 4074841 51321796 ~ 51322433 (+) True LOC110501653

Expression Profile