RNA id: TU172904


Basic Information

Item Value
RNA id TU172904
length 714
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G150956
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 47433957 ~ 47434670 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgcaactcagcattctttgtcctccaaacacgacgagttgagtttttaccaaaaagttatattttggtttcatctgaccttatgacattctcccaatcttcttctggatgatccaaatgctctttagcaaacttcagacggggctggacatgtactggcttaagcagggggacacgtctggcactgcaggatttgaatccctggcagcgtagtgtgttactgatggtaggctttgttactttggtcccagctctatgcaggtcattcactaggtccccctgtgtggttctgggaattttgctcaccgttcttgtgatcattttaatcccacggggtgagatcttgcgtggagccccagatcgagggagattatcagtggtcttgtatgtcttccatttcctaaataattgctcccacagttgatttcttcaaaccaagctgcttacctattgcagattcagtcttcccagcctggtgcaggtctacaattttgtttctggtgtcctttgacagctctttggtcttggccatagtggagtttggagtgtgactgtttgaggttgtggacaggtggcttttatactgataacaagttcaaacaggtgccattaatacaggtaacgagtggaggacagaggagcctcttaaagaagaagttacaggtctgtgagagccagaaatcttgcttgtttgtaggtgaccaaatacttattt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU172838 lncRNA upstream 40416 47393263 ~ 47393541 (+) True G150890
TU172489 lncRNA upstream 56783 47375488 ~ 47377174 (+) True G150557
TU172508 lncRNA upstream 67840 47365665 ~ 47366117 (+) True G150576
TU172498 lncRNA upstream 83922 47349821 ~ 47350035 (+) True G150566
TU172496 lncRNA upstream 86412 47347270 ~ 47347545 (+) True G150564
TU173172 lncRNA downstream 208800 47643470 ~ 47643678 (+) True G151214
TU173184 lncRNA downstream 216777 47651447 ~ 47654336 (+) True G151226
TU173220 lncRNA downstream 237087 47671757 ~ 47755373 (+) True G151259
TU173356 lncRNA downstream 351757 47786427 ~ 47791512 (+) True G151389
TU173384 lncRNA downstream 366851 47801521 ~ 47801723 (+) True G151413
NM_001124697.1 mRNA upstream 60258 47368180 ~ 47373699 (+) True igf2b
XM_036933601.1 mRNA upstream 228516 47134215 ~ 47205441 (+) False cpt1ab
XM_036949781.1 mRNA downstream 592739 48027409 ~ 48133974 (+) False osbpl5
XM_036949784.1 mRNA downstream 592792 48027462 ~ 48133974 (+) False osbpl5
XM_036949787.1 mRNA downstream 592792 48027462 ~ 48133974 (+) False osbpl5
XM_036949788.1 mRNA downstream 592792 48027462 ~ 48133974 (+) False osbpl5
XM_036949798.1 mRNA downstream 592794 48027464 ~ 48133974 (+) False osbpl5
TU172245 other upstream 448731 46981719 ~ 46985226 (+) True uevld
TU169948 other upstream 1941578 45472745 ~ 45492379 (+) True G148191
TU169947 other upstream 1961328 45472082 ~ 45472629 (+) False G148191
TU169210 other upstream 2562457 44870800 ~ 44871500 (+) True G147510
TU168471 other upstream 3004564 44429153 ~ 44429393 (+) True G146841
TU172952 other downstream 63278 47497948 ~ 47547579 (+) True G150997
TU174225 other downstream 1122112 48556782 ~ 48557686 (+) True G152167
TU176287 other downstream 2663746 50098416 ~ 50100474 (+) True LOC110491026
TU177155 other downstream 3730745 51165415 ~ 51167174 (+) True G154859
TU177860 other downstream 3887126 51321796 ~ 51322433 (+) True LOC110501653

Expression Profile