RNA id: TU173220


Basic Information

Item Value
RNA id TU173220
length 519
lncRNA type inter_gene
GC content 0.45
exon number 2
gene id G151259
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 47671757 ~ 47755373 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aaaataaacatatccaggtgttagaatggccaagtcaaagtccagacctgaatccaatcgagaatctgtggaaagaactgaaaactgctgttcacaaatgctctccatccccactgagctcgagctgttttgcaaggaggaatgggaaaaaatgtcagtctctcgatgtgcaaaactgatagagacataccccaagcgacttacagctgtaatcgcagcaaaaggtggcgctacaaagtattaacttaagggggctgaacaattttgcacggccaatttttcagtttttgatttgttaaaaaagtttgaaatatccaataaatgtcgttccacttcatgattgtgtcccacttgttgtttattcttcacaaacaaatacagttttatatctttatgtttgaagcctgaaatgtggcaaaaggtcgcaaagttcaagggggccgaatactttcgcaaggcactgtatgtgaagcatttactcggcctgcaatttctgaggctggtaactctaatgaacgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU173184 lncRNA upstream 17421 47651447 ~ 47654336 (+) True G151226
TU173172 lncRNA upstream 28079 47643470 ~ 47643678 (+) True G151214
TU172904 lncRNA upstream 237087 47433957 ~ 47434670 (+) True G150956
TU172838 lncRNA upstream 278216 47393263 ~ 47393541 (+) True G150890
TU172489 lncRNA upstream 294583 47375488 ~ 47377174 (+) True G150557
TU173356 lncRNA downstream 31054 47786427 ~ 47791512 (+) True G151389
TU173384 lncRNA downstream 46148 47801521 ~ 47801723 (+) True G151413
TU173387 lncRNA downstream 47938 47803311 ~ 47803699 (+) True G151416
TU173390 lncRNA downstream 51149 47806522 ~ 47806724 (+) True G151419
TU173402 lncRNA downstream 59036 47814409 ~ 47814885 (+) True G151431
NM_001124697.1 mRNA upstream 298058 47368180 ~ 47373699 (+) True igf2b
XM_036933601.1 mRNA upstream 466316 47134215 ~ 47205441 (+) False cpt1ab
XM_036949781.1 mRNA downstream 272036 48027409 ~ 48133974 (+) False osbpl5
XM_036949784.1 mRNA downstream 272089 48027462 ~ 48133974 (+) False osbpl5
XM_036949787.1 mRNA downstream 272089 48027462 ~ 48133974 (+) False osbpl5
XM_036949788.1 mRNA downstream 272089 48027462 ~ 48133974 (+) False osbpl5
XM_036949798.1 mRNA downstream 272091 48027464 ~ 48133974 (+) False osbpl5
TU172952 other upstream 124178 47497948 ~ 47547579 (+) True G150997
TU172245 other upstream 686531 46981719 ~ 46985226 (+) True uevld
TU169948 other upstream 2179378 45472745 ~ 45492379 (+) True G148191
TU169947 other upstream 2199128 45472082 ~ 45472629 (+) False G148191
TU169210 other upstream 2800257 44870800 ~ 44871500 (+) True G147510
TU174225 other downstream 801409 48556782 ~ 48557686 (+) True G152167
TU176287 other downstream 2343043 50098416 ~ 50100474 (+) True LOC110491026
TU177155 other downstream 3410042 51165415 ~ 51167174 (+) True G154859
TU177860 other downstream 3566423 51321796 ~ 51322433 (+) True LOC110501653
TU177846 other downstream 3656893 51412266 ~ 51417118 (+) True rl28

Expression Profile