RNA id: TU173387


Basic Information

Item Value
RNA id TU173387
length 389
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G151416
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 47803311 ~ 47803699 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCTTTGCcctgattacagctttgcaccctctgcattctctcaaccaccttcatgagaactgttctgccttattattattcgaccatgctggtcatttatgaacatttgaacatcttggccatgttctgatataatctccacccggcacagccagaagaggactggccatcccacatatgctctctctaattctctctttctttctctctctcggaggacctgagccctaggaccatgccccaggaatacctgacatgatgactccttgctgtccccagtccacctgactgtgctgctgctcgtttcaactgttctgccttattgttattcgaccatgctggtcatttatgaacatttgaacatcttgaccatgttctgttataatctcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU173384 lncRNA upstream 1588 47801521 ~ 47801723 (+) True G151413
TU173356 lncRNA upstream 11799 47786427 ~ 47791512 (+) True G151389
TU173220 lncRNA upstream 47938 47671757 ~ 47755373 (+) True G151259
TU173184 lncRNA upstream 148975 47651447 ~ 47654336 (+) True G151226
TU173172 lncRNA upstream 159633 47643470 ~ 47643678 (+) True G151214
TU173390 lncRNA downstream 2823 47806522 ~ 47806724 (+) True G151419
TU173402 lncRNA downstream 10710 47814409 ~ 47814885 (+) True G151431
TU173411 lncRNA downstream 17538 47821237 ~ 47822508 (+) False G151438
TU173412 lncRNA downstream 17538 47821237 ~ 47822264 (+) False G151438
TU173416 lncRNA downstream 17538 47821237 ~ 47822508 (+) True G151438
NM_001124697.1 mRNA upstream 429612 47368180 ~ 47373699 (+) True igf2b
XM_036933601.1 mRNA upstream 597870 47134215 ~ 47205441 (+) False cpt1ab
XM_036949781.1 mRNA downstream 223710 48027409 ~ 48133974 (+) False osbpl5
XM_036949784.1 mRNA downstream 223763 48027462 ~ 48133974 (+) False osbpl5
XM_036949787.1 mRNA downstream 223763 48027462 ~ 48133974 (+) False osbpl5
XM_036949788.1 mRNA downstream 223763 48027462 ~ 48133974 (+) False osbpl5
XM_036949798.1 mRNA downstream 223765 48027464 ~ 48133974 (+) False osbpl5
TU172952 other upstream 255732 47497948 ~ 47547579 (+) True G150997
TU172245 other upstream 818085 46981719 ~ 46985226 (+) True uevld
TU169948 other upstream 2310932 45472745 ~ 45492379 (+) True G148191
TU169947 other upstream 2330682 45472082 ~ 45472629 (+) False G148191
TU169210 other upstream 2931811 44870800 ~ 44871500 (+) True G147510
TU174225 other downstream 753083 48556782 ~ 48557686 (+) True G152167
TU176287 other downstream 2294717 50098416 ~ 50100474 (+) True LOC110491026
TU177155 other downstream 3361716 51165415 ~ 51167174 (+) True G154859
TU177860 other downstream 3518097 51321796 ~ 51322433 (+) True LOC110501653
TU177846 other downstream 3608567 51412266 ~ 51417118 (+) True rl28

Expression Profile