RNA id: TU173390


Basic Information

Item Value
RNA id TU173390
length 203
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G151419
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 47806522 ~ 47806724 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gaaagggccttccccaaacttgcCACAAAATtgtaagcacagaattgtctagaatgtcattgtatgctgtagcgttaagatttcccttcactggaactaaggggtctagcccgaaccatgaaaacagccccacaccattattcctcctccaccaaactttacagttggcactatgcattctggcaggtagcgttctcctggca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU173387 lncRNA upstream 2823 47803311 ~ 47803699 (+) True G151416
TU173384 lncRNA upstream 4799 47801521 ~ 47801723 (+) True G151413
TU173356 lncRNA upstream 15010 47786427 ~ 47791512 (+) True G151389
TU173220 lncRNA upstream 51149 47671757 ~ 47755373 (+) True G151259
TU173184 lncRNA upstream 152186 47651447 ~ 47654336 (+) True G151226
TU173402 lncRNA downstream 7685 47814409 ~ 47814885 (+) True G151431
TU173411 lncRNA downstream 14513 47821237 ~ 47822508 (+) False G151438
TU173412 lncRNA downstream 14513 47821237 ~ 47822264 (+) False G151438
TU173416 lncRNA downstream 14513 47821237 ~ 47822508 (+) True G151438
TU173436 lncRNA downstream 24987 47831711 ~ 47831940 (+) True G151449
NM_001124697.1 mRNA upstream 432823 47368180 ~ 47373699 (+) True igf2b
XM_036933601.1 mRNA upstream 601081 47134215 ~ 47205441 (+) False cpt1ab
XM_036949781.1 mRNA downstream 220685 48027409 ~ 48133974 (+) False osbpl5
XM_036949784.1 mRNA downstream 220738 48027462 ~ 48133974 (+) False osbpl5
XM_036949787.1 mRNA downstream 220738 48027462 ~ 48133974 (+) False osbpl5
XM_036949788.1 mRNA downstream 220738 48027462 ~ 48133974 (+) False osbpl5
XM_036949798.1 mRNA downstream 220740 48027464 ~ 48133974 (+) False osbpl5
TU172952 other upstream 258943 47497948 ~ 47547579 (+) True G150997
TU172245 other upstream 821296 46981719 ~ 46985226 (+) True uevld
TU169948 other upstream 2314143 45472745 ~ 45492379 (+) True G148191
TU169947 other upstream 2333893 45472082 ~ 45472629 (+) False G148191
TU169210 other upstream 2935022 44870800 ~ 44871500 (+) True G147510
TU174225 other downstream 750058 48556782 ~ 48557686 (+) True G152167
TU176287 other downstream 2291692 50098416 ~ 50100474 (+) True LOC110491026
TU177155 other downstream 3358691 51165415 ~ 51167174 (+) True G154859
TU177860 other downstream 3515072 51321796 ~ 51322433 (+) True LOC110501653
TU177846 other downstream 3605542 51412266 ~ 51417118 (+) True rl28

Expression Profile