RNA id: TU173416


Basic Information

Item Value
RNA id TU173416
length 610
lncRNA type inter_gene
GC content 0.46
exon number 4
gene id G151438
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 47821237 ~ 47822508 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGATAACAAACGGAGAAAAACGCAGGGTTGGATAACAAGCGGAGAGAAAACCAGGGTTGGATGAAAAGCAGAGAgaaaagcattgttggttaacatGCGGAGAGAAAACCAGGGTTGGAGAACAAGCGGAGAGAAAACAAGGGTTGGATAACGAGCGGAGAGAAAACCAGGGTTGGATAACGAGCAGAGAGAAAAACAGGGTTGGATAACAAGCGTAGAGAAAAGCAGGGTTGGATAACATGCGTAGAGAAAAGCAGTGTTGGATAACAAGCGGAGAGAAAAGCAGGGTTGGATAACAAGCGGAGAGAAAAGCATTGTTGGTTGacaaGCAGAGAGAAAACCAGGGTTGTATAACAAGCTTAGAGAAAACCAGGGTTGGATAACAAGCGGAGAGAAAACCAGGGTTGGATAACAAGCGGAGAGAAAACCAGGGTTGGATAACAAGCGGAGAGAAAAACAGGGTTGGATAACAAGCAGAGAGAAAACAGGGGTTGGATAACAAGCGGAGAGAAAACCAGGGTTGGAGAACAAGCGGAGAGAAAGCCAGGGTTGGATAACAAGTGGAGAGAAAACCAGGGTTGGATAACAAGCGGAGAGAAAACCAGGGTTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU173402 lncRNA upstream 6352 47814409 ~ 47814885 (+) True G151431
TU173390 lncRNA upstream 14513 47806522 ~ 47806724 (+) True G151419
TU173387 lncRNA upstream 17538 47803311 ~ 47803699 (+) True G151416
TU173384 lncRNA upstream 19514 47801521 ~ 47801723 (+) True G151413
TU173356 lncRNA upstream 29725 47786427 ~ 47791512 (+) True G151389
TU173436 lncRNA downstream 9203 47831711 ~ 47831940 (+) True G151449
TU173446 lncRNA downstream 19166 47841674 ~ 47842148 (+) True G151459
TU173451 lncRNA downstream 21248 47843756 ~ 47843968 (+) True G151464
TU173460 lncRNA downstream 32193 47854701 ~ 47855031 (+) True G151473
TU173476 lncRNA downstream 37782 47860290 ~ 47860946 (+) True G151481
NM_001124697.1 mRNA upstream 447538 47368180 ~ 47373699 (+) True igf2b
XM_036933601.1 mRNA upstream 615796 47134215 ~ 47205441 (+) False cpt1ab
XM_036949781.1 mRNA downstream 204901 48027409 ~ 48133974 (+) False osbpl5
XM_036949784.1 mRNA downstream 204954 48027462 ~ 48133974 (+) False osbpl5
XM_036949787.1 mRNA downstream 204954 48027462 ~ 48133974 (+) False osbpl5
XM_036949788.1 mRNA downstream 204954 48027462 ~ 48133974 (+) False osbpl5
XM_036949798.1 mRNA downstream 204956 48027464 ~ 48133974 (+) False osbpl5
TU172952 other upstream 273658 47497948 ~ 47547579 (+) True G150997
TU172245 other upstream 836011 46981719 ~ 46985226 (+) True uevld
TU169948 other upstream 2328858 45472745 ~ 45492379 (+) True G148191
TU169947 other upstream 2348608 45472082 ~ 45472629 (+) False G148191
TU169210 other upstream 2949737 44870800 ~ 44871500 (+) True G147510
TU174225 other downstream 734274 48556782 ~ 48557686 (+) True G152167
TU176287 other downstream 2275908 50098416 ~ 50100474 (+) True LOC110491026
TU177155 other downstream 3342907 51165415 ~ 51167174 (+) True G154859
TU177860 other downstream 3499288 51321796 ~ 51322433 (+) True LOC110501653
TU177846 other downstream 3589758 51412266 ~ 51417118 (+) True rl28

Expression Profile