RNA id: TU173477


Basic Information

Item Value
RNA id TU173477
length 254
lncRNA type inter_gene
GC content 0.29
exon number 2
gene id G151482
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 47860355 ~ 47860645 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAAATTAATAggcctttaaacgaaacacggcttgtaaacaaaaataaataggcttttaaacgaaacaTGGCTTGTTACAAAAATTAATAGgactttaaacgaaacacggcttgtaacaaaaataaataggcttttaaacgaaacacggcttgttacaaaaataaataggcttttaaacgaaacacagcttgtaacaaaaataaataggcttttaaacgaaacacagtttgtaacaaaaataaataggctttaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU173460 lncRNA upstream 5324 47854701 ~ 47855031 (+) True G151473
TU173451 lncRNA upstream 16387 47843756 ~ 47843968 (+) True G151464
TU173446 lncRNA upstream 18207 47841674 ~ 47842148 (+) True G151459
TU173436 lncRNA upstream 28415 47831711 ~ 47831940 (+) True G151449
TU173416 lncRNA upstream 37847 47821237 ~ 47822508 (+) True G151438
TU173481 lncRNA downstream 2256 47862901 ~ 47863162 (+) True G151486
TU173482 lncRNA downstream 2823 47863468 ~ 47863779 (+) True G151487
TU173535 lncRNA downstream 66286 47926931 ~ 47927693 (+) True G151533
TU173539 lncRNA downstream 68559 47929204 ~ 47930164 (+) True G151535
TU173655 lncRNA downstream 279953 48140598 ~ 48140921 (+) True G151643
NM_001124697.1 mRNA upstream 486656 47368180 ~ 47373699 (+) True igf2b
XM_036933601.1 mRNA upstream 654914 47134215 ~ 47205441 (+) False cpt1ab
XM_036949781.1 mRNA downstream 166764 48027409 ~ 48133974 (+) False osbpl5
XM_036949784.1 mRNA downstream 166817 48027462 ~ 48133974 (+) False osbpl5
XM_036949787.1 mRNA downstream 166817 48027462 ~ 48133974 (+) False osbpl5
XM_036949788.1 mRNA downstream 166817 48027462 ~ 48133974 (+) False osbpl5
XM_036949798.1 mRNA downstream 166819 48027464 ~ 48133974 (+) False osbpl5
TU172952 other upstream 312776 47497948 ~ 47547579 (+) True G150997
TU172245 other upstream 875129 46981719 ~ 46985226 (+) True uevld
TU169948 other upstream 2367976 45472745 ~ 45492379 (+) True G148191
TU169947 other upstream 2387726 45472082 ~ 45472629 (+) False G148191
TU169210 other upstream 2988855 44870800 ~ 44871500 (+) True G147510
TU174225 other downstream 696137 48556782 ~ 48557686 (+) True G152167
TU176287 other downstream 2237771 50098416 ~ 50100474 (+) True LOC110491026
TU177155 other downstream 3304770 51165415 ~ 51167174 (+) True G154859
TU177860 other downstream 3461151 51321796 ~ 51322433 (+) True LOC110501653
TU177846 other downstream 3551621 51412266 ~ 51417118 (+) True rl28

Expression Profile