RNA id: TU173539


Basic Information

Item Value
RNA id TU173539
length 358
lncRNA type intronic
GC content 0.40
exon number 2
gene id G151535
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 47929204 ~ 47930164 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctactactaccaccataaccactagtatcatttatacctctaatatctctactaccaccaccattaccatGAGTAGCATTTATacctaatatctctactaccaccaccattaccatGAGTAGCATGTATacctaatatctctactactgcCACCATTACCATGAGTAGCAGTTATAtctaatatctctactaccaccaccattaccatGAGTAGCATTTATacctaatatctctactaccaccaccattaccatGAGTAGCATGTATacctaatatctctactactgcCACCATTACCATGAGTAGCAGTTATACCTAATATCTCTACTGCCACCATTATCATGAGTAGCATTTATAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU173535 lncRNA upstream 1511 47926931 ~ 47927693 (+) True G151533
TU173482 lncRNA upstream 65425 47863468 ~ 47863779 (+) True G151487
TU173481 lncRNA upstream 66042 47862901 ~ 47863162 (+) True G151486
TU173476 lncRNA upstream 68258 47860290 ~ 47860946 (+) True G151481
TU173477 lncRNA upstream 68559 47860355 ~ 47860645 (+) True G151482
TU173655 lncRNA downstream 210434 48140598 ~ 48140921 (+) True G151643
TU173660 lncRNA downstream 216902 48147066 ~ 48147315 (+) True G151648
TU173920 lncRNA downstream 270421 48200585 ~ 48200786 (+) True G151890
TU173936 lncRNA downstream 287144 48217308 ~ 48217559 (+) True G151906
TU173947 lncRNA downstream 295120 48225284 ~ 48225603 (+) True G151917
NM_001124697.1 mRNA upstream 555505 47368180 ~ 47373699 (+) True igf2b
XM_036933601.1 mRNA upstream 723763 47134215 ~ 47205441 (+) False cpt1ab
XM_036949781.1 mRNA downstream 97245 48027409 ~ 48133974 (+) False osbpl5
XM_036949784.1 mRNA downstream 97298 48027462 ~ 48133974 (+) False osbpl5
XM_036949787.1 mRNA downstream 97298 48027462 ~ 48133974 (+) False osbpl5
XM_036949788.1 mRNA downstream 97298 48027462 ~ 48133974 (+) False osbpl5
XM_036949798.1 mRNA downstream 97300 48027464 ~ 48133974 (+) False osbpl5
TU172952 other upstream 381625 47497948 ~ 47547579 (+) True G150997
TU172245 other upstream 943978 46981719 ~ 46985226 (+) True uevld
TU169948 other upstream 2436825 45472745 ~ 45492379 (+) True G148191
TU169947 other upstream 2456575 45472082 ~ 45472629 (+) False G148191
TU169210 other upstream 3057704 44870800 ~ 44871500 (+) True G147510
TU174225 other downstream 626618 48556782 ~ 48557686 (+) True G152167
TU176287 other downstream 2168252 50098416 ~ 50100474 (+) True LOC110491026
TU177155 other downstream 3235251 51165415 ~ 51167174 (+) True G154859
TU177860 other downstream 3391632 51321796 ~ 51322433 (+) True LOC110501653
TU177846 other downstream 3482102 51412266 ~ 51417118 (+) True rl28

Expression Profile