RNA id: TU173845



Basic Information


Item Value
RNA id TU173845
length 210
lncRNA type antisense_over
GC content 0.53
exon number 2
gene id G151816
representative True

Chromosome Information


Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 48128474 ~ 48128710 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


gtgtgtgtacgcactctatctgtgtgtgtatgatctatgtgtgtgtatgtccattcGTTGGTGACAGAGTCCAGGTTGAAGAGTCTGGGGCGCCAAGGTTGGTCTCCACGGTCTTTGGCCTGATTCCTCTGAGCCTCCTCCAGTACGAACTTCTCCTGGGTTGCCTGGTTCTGGTCACGGTCCACTATAGCACTGGTCACATGCTGCCAC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU173715 lncRNA downstream 169940 47922543 ~ 47958534 (-) True G151700
TU173723 lncRNA downstream 199132 47928874 ~ 47929342 (-) True G151701
TU173711 lncRNA downstream 207753 47919995 ~ 47920721 (-) True G151698
TU173470 lncRNA downstream 272913 47855103 ~ 47855561 (-) True G151475
TU173453 lncRNA downstream 283289 47844821 ~ 47845185 (-) True G151466
TU173844 lncRNA upstream 162 48128872 ~ 48129488 (-) True G151815
TU173843 lncRNA upstream 2823 48131533 ~ 48133957 (-) True G151814
TU173872 lncRNA upstream 6069 48134779 ~ 48135018 (-) True G151842
TU173884 lncRNA upstream 19251 48147961 ~ 48148246 (-) True G151854
TU173885 lncRNA upstream 21598 48150308 ~ 48150613 (-) True G151855
XM_021564139.2 mRNA downstream 130017 47864812 ~ 47998457 (-) True mrpl23
XM_021564132.2 mRNA downstream 816769 47227366 ~ 47311705 (-) False si:ch211-236l14.4
XM_021564121.2 mRNA downstream 997957 47033009 ~ 47130517 (-) True si:dkeyp-19e1.3
XM_036949765.1 mRNA downstream 1062318 47033009 ~ 47066156 (-) False si:dkeyp-19e1.3
XM_021564083.2 mRNA downstream 1206866 46872295 ~ 46921608 (-) False tmem86a
XM_021564155.2 mRNA upstream 146364 48275074 ~ 48277572 (-) True phlda2
XM_021564164.2 mRNA upstream 190510 48319220 ~ 48380820 (-) False nap1l4a
XM_036949818.1 mRNA upstream 190510 48319220 ~ 48380820 (-) False nap1l4a
XM_036949834.1 mRNA upstream 190510 48319220 ~ 48380820 (-) False nap1l4a
XM_021564187.2 mRNA upstream 190510 48319220 ~ 48381412 (-) False nap1l4a
TU173467 other downstream 277126 47850785 ~ 47851348 (-) True G151474
TU172611 other downstream 923041 47194893 ~ 47205433 (-) False G150675
TU172551 other downstream 1134809 46964734 ~ 46993665 (-) True G150618
TU172175 other downstream 1206881 46844180 ~ 46921593 (-) False tmem86a
TU173905 other upstream 59248 48187958 ~ 48188278 (-) True G151875
TU173950 other upstream 97589 48226299 ~ 48226944 (-) True G151920
TU174069 other upstream 174601 48303311 ~ 48303663 (-) True G152024
TU176510 other upstream 1972720 50101430 ~ 50107447 (-) False G154300
TU176505 other upstream 1972843 50101553 ~ 50106737 (-) True G154300

Expression Profile