RNA id: TU174069



Basic Information


Item Value
RNA id TU174069
length 353
RNA type TUCP
GC content 0.52
exon number 1
gene id G152024
representative True

Chromosome Information


Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 48303311 ~ 48303663 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


cacctacgactgcgtggccatgcacgcctccaactcaatcatcaagtttgcggatgacactacagtggtaggcttgattaccaacaacgacgagacggcctacagggaggaggtgagggccctcggagtgtggtgtcaggaaaataacttcacacacaatgtcaacaaaacaaaagagatgattgtggacttcaggaaacagcaaagggagcacccccctatccacatcgacgggacagtagtggagagggtagtaagttttaagttcctcggcgtacacatcactgacaaactgaattggtccacccacacagacagcgtcgtgaagaaggcgcagcagcgcctcttcaacc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU174062 lncRNA downstream 4722 48298346 ~ 48298589 (-) True G152017
TU174044 lncRNA downstream 31217 48271615 ~ 48272094 (-) True G152002
TU173969 lncRNA downstream 67357 48234024 ~ 48235954 (-) True G151936
TU173952 lncRNA downstream 75786 48227319 ~ 48227525 (-) True G151922
TU173941 lncRNA downstream 83317 48219703 ~ 48219994 (-) True G151911
TU174071 lncRNA upstream 1301 48304964 ~ 48305183 (-) True G152026
TU174083 lncRNA upstream 9633 48313296 ~ 48313529 (-) True G152038
TU174401 lncRNA upstream 101509 48405172 ~ 48455258 (-) True G152328
TU174451 lncRNA upstream 160160 48463823 ~ 48507440 (-) True G152371
TU174456 lncRNA upstream 168393 48472056 ~ 48476174 (-) True G152375
XM_021564155.2 mRNA downstream 25739 48275074 ~ 48277572 (-) True phlda2
XM_021564139.2 mRNA downstream 304854 47864812 ~ 47998457 (-) True mrpl23
XM_021564132.2 mRNA downstream 991606 47227366 ~ 47311705 (-) False si:ch211-236l14.4
XM_021564121.2 mRNA downstream 1172794 47033009 ~ 47130517 (-) True si:dkeyp-19e1.3
XM_036949765.1 mRNA downstream 1237155 47033009 ~ 47066156 (-) False si:dkeyp-19e1.3
XM_021564164.2 mRNA upstream 15557 48319220 ~ 48380820 (-) False nap1l4a
XM_036949818.1 mRNA upstream 15557 48319220 ~ 48380820 (-) False nap1l4a
XM_036949834.1 mRNA upstream 15557 48319220 ~ 48380820 (-) False nap1l4a
XM_021564187.2 mRNA upstream 15557 48319220 ~ 48381412 (-) False nap1l4a
XM_021564172.2 mRNA upstream 15557 48319220 ~ 48381421 (-) False nap1l4a
TU173950 other downstream 76367 48226299 ~ 48226944 (-) True G151920
TU173905 other downstream 115033 48187958 ~ 48188278 (-) True G151875
TU173467 other downstream 451963 47850785 ~ 47851348 (-) True G151474
TU172611 other downstream 1097878 47194893 ~ 47205433 (-) False G150675
TU172551 other downstream 1309646 46964734 ~ 46993665 (-) True G150618
TU176510 other upstream 1797767 50101430 ~ 50107447 (-) False G154300
TU176505 other upstream 1797890 50101553 ~ 50106737 (-) True G154300
TU176559 other upstream 1853023 50156686 ~ 50157825 (-) True G154338
TU177312 other upstream 2112080 50415743 ~ 50452147 (-) True G155003
TU177396 other upstream 2276135 50579798 ~ 50581349 (-) True G155072

Expression Profile