RNA id: TU174188


Basic Information

Item Value
RNA id TU174188
length 1594
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G152138
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 48513799 ~ 48515392 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tctggctctggccaaACCTATCGGTTTCTGTGACCAATCAGAACCGTTAGAATGTGTTTGCGTTCTAGCAATTGTTGGGGAGGTattcagatccagactcatttcGGTGAAGAAACGTGGGTGTGGCATAGCATTTGGCCAgagcaaggagtttgggtagccagggAAGTGTTTTCTGGGATTGAATTAGATTTATTCAGTGCACACAAGGAAGCCCCACATGCAAACCTCGTTACACAAGTTTATAGGGTAAGTAAACACCAAATAATGAGTGTTTAAATCAAAAAGTGTAAAAAAGGCATACATTTCCTAAATCTGCATCGGCTCCTATTTGAATTCATCCTCCCTATATAAAGCGAAGCCACTTTAGAAAGGGAACCCAAGTGCCCGCCACAGCTGACGCATCAGGTGCTCGTAACAATCGCACCTACCTTATTTGGCTGTCGATTTAAGGTGACCGGTTCTGCTCACACATTCTGCTGTTGCTCTCTGCTTCCACTAGTATGTATTTGCTTCTTTTGCTGCATTGACGCTCTTGCTGTAATTGGCGGTACTCCCTATGCTGTTGTTTCTGATATGACATTTTCTTTGCAAATTCTCGCTATCTGTGTTTGAATCTCACCCGAGGTCACTCAATCTGCTCATGTTGTAATGTTAGGCTGCTGCGGGGATGTCATTGATTGCGGGGATCAACCACGTTGCTGCTCTAGTGTTGTCAGTCAATAGCCGGCTACAATTAGCTAAGTAGAATTAGCCTCGGGAGTAGCCTATCATATACTTTGTTTGTTCCCAATGCCAGTTTTGTTGTACAAATTATTTCTGCCTATGGTTATTATTCtttggaaccctattcccttacaCTTTTTAAACTAGAAACACATTCAACCTCATTTTCAGACTGGTCTGGATTAGTGCGcttgttcaaatccaggctgtatcacatccggccgtgattgggagtcccatagggcggcacacagttggcccagcgttgtcttggTTTGGCCgtgttaggccgtcattgtaaataagaatttgttcttaactgacttgcctagttaaataaaattaaaaaaaatgtaaacattttttatCCTACACATTTGCTGCTCAGAAAATCTGAGTATATGGTGATGACCATGCTGGTTCCTCATCTAGGAAAGAGACACTTTGTATGTGGACAATTGGTACAGAAGTCTTCCAGCATCTGCTCTCCAACAGCACAGGGACCTGTGGCACAGTCAGGATGAACAGGAAGGGGATGCCGGGATTCGGAAGCAGGAAGATGCAGAGGGGGAGGTTGAGTTCAAGGAGAATggtcaacagctggcagtaaagtggcaCGACAAACGAGACATCCATGTCCTCTCCAGTGTCCATACGTCAACCATGTCGGTCACAGGGATGGAGGACCACCTGACGGAAGAGAGAAACATCAAACCAGACTGTGtgcttgactataacctcaaaatgggggcagTGGATAACGCAGACATGATAAATGTGAAATGCGTTCAGAAAACTGTCCTCAATGGTCACATAGTTCACCACCAAATAGCTGGTGAGATGATTACTGTACAATATGTTTTTGGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU174140 lncRNA upstream 64076 48449143 ~ 48449723 (+) True G152095
TU174090 lncRNA upstream 194541 48319096 ~ 48319258 (+) True G152045
TU174088 lncRNA upstream 196240 48317324 ~ 48317559 (+) True G152043
TU174084 lncRNA upstream 199930 48313661 ~ 48313869 (+) True G152039
TU174073 lncRNA upstream 206974 48306584 ~ 48306825 (+) True G152028
TU174189 lncRNA downstream 1119 48516511 ~ 48516959 (+) True G152139
TU174190 lncRNA downstream 2920 48518312 ~ 48518642 (+) True G152140
TU174192 lncRNA downstream 5717 48521109 ~ 48521432 (+) True G152142
TU174195 lncRNA downstream 13141 48528533 ~ 48528860 (+) True G152145
TU174196 lncRNA downstream 13923 48529315 ~ 48529599 (+) True G152146
XM_021564236.2 mRNA upstream 11919 48481528 ~ 48501880 (+) True prr5l
XM_021564195.2 mRNA upstream 66012 48394983 ~ 48447787 (+) True fcsk
XR_005036978.1 mRNA upstream 96741 48412707 ~ 48417058 (+) True LOC118940424
XM_036949788.1 mRNA upstream 379825 48027462 ~ 48133974 (+) False osbpl5
XM_021564280.2 mRNA downstream 221127 48736519 ~ 48738551 (+) True cdkn1cb
XM_021564368.2 mRNA downstream 1233721 49749113 ~ 49767125 (+) True LOC110490948
XM_036949980.1 mRNA downstream 1552817 50068209 ~ 50093310 (+) True LOC110491010
XM_021564376.2 mRNA downstream 1582995 50098387 ~ 50100624 (+) False LOC110491026
XM_021564382.2 mRNA downstream 1635069 50150461 ~ 50159171 (+) True LOC110491039
TU172952 other upstream 966220 47497948 ~ 47547579 (+) True G150997
TU172245 other upstream 1528573 46981719 ~ 46985226 (+) True uevld
TU169948 other upstream 3021420 45472745 ~ 45492379 (+) True G148191
TU169947 other upstream 3041170 45472082 ~ 45472629 (+) False G148191
TU169210 other upstream 3642299 44870800 ~ 44871500 (+) True G147510
TU174225 other downstream 41390 48556782 ~ 48557686 (+) True G152167
TU176287 other downstream 1583024 50098416 ~ 50100474 (+) True LOC110491026
TU177155 other downstream 2650023 51165415 ~ 51167174 (+) True G154859
TU177860 other downstream 2806404 51321796 ~ 51322433 (+) True LOC110501653
TU177846 other downstream 2896874 51412266 ~ 51417118 (+) True rl28

Expression Profile