RNA id: TU174244


Basic Information

Item Value
RNA id TU174244
length 1705
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G152183
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 48659218 ~ 48660922 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttgatctgacatgcacggtcaactatgggaccttatatttccaaatcatgtccaatcaatttaaacatttaccacaggtggactccaatgaagttgtagaaatatcaaggatgatcaatggaaacagaatgcacctgagctcaatttcgagtctcatagaaaagggtctgaatacttaggtaaacaAGGCATCAGTTTCTAGATATATACAattgcaaaaaataaaataaacttttCGCCTTgacatgaggtattgtgtgtagatttaattttttatttttttaaatccattttagaatagggccgtaacataaaatgtggaaaagatcaaggggtctgaatactttccaaaggcactgtacacacactaccGGTAAAAAGTtaaaacacacactcattcaagggtttttcttaatgtttcactattttctacattgtagaataataatgaagacatcaaaactatatggaatcatgtagtaaccaaaactgTCAAACcaataaaatattttatatttgagattcttcaaaatagccaccctttgccttgacagatttgcacactcttggcattttctcaaccagcttcatgaggtagtcaccaggaacgcatttcaattaacaggggtgccttgttaaaagttaatttgtggaatttttccTTTTTAatgcctttgagccaatcagttgtgttgtgacaaggtaggggtggtatacagaagatagccctatttggaaaaATACCAAgtgcatattatggcaagaacagctcaaataagcaagataaacagtccatcattactttaagacattaaggtcagtcaatacggaacatttcaagaactttaaaagtttcttcaagtgcagtcgcaaaaaccatcaaggtctatgatgaaactggctatcatgaggaccaccacaggaaaagaagacctctgctgcagaggataagttcattagttaccagcctcagaaattgcagtccaaataaatgcttcagagttcaagtaacagacacatctctacatcaactgttcagaggagaccgtgtgaatcaggccttcaaggtcaaattgctgaaaagaaaccactactaaaggacaccaatacgaattagagacttgcttggaccaagatacacaaacaatggacattagaccggtagaaatgtgtcctttggtctgatgagtccaaattggagatttttggttccaaccggcgtgtctttgtgagacgcggtgtgggtgaatggatgatctccgcatgtgtatttcccaccgtaaagcacgGAACTGGTgttatggtgctttgctggtgacactgtccgaTTTATTTAACATTCAAcggacacttaaccagcatggctaccacagcattctgcagagatatcccatctggtttgcacttagtgggaataCCATTTGTTCTTCAACAGGataaatgacccaacacacctccaggctgtgtaaggactatttgaccaagaagaagggtgatggagtgctgcatcagatgacttggcctccacaatcacccgacctcaagcaaattgagatggtttgggatgagttggaccgctgagtgaaggaaaagcagccaacaagtactcagcacatgtgggaactccttcaaaactgttggaaaagtattccaggtgaagctggttgagagaatgccaagagtgggcaaagccgtcaaggaaaag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU174242 lncRNA upstream 1289 48656193 ~ 48657929 (+) True G152182
TU174298 lncRNA upstream 3587 48655291 ~ 48655631 (+) True G152235
TU174268 lncRNA upstream 43089 48615810 ~ 48616129 (+) True G152207
TU174253 lncRNA upstream 62514 48596002 ~ 48596704 (+) True G152192
TU174251 lncRNA upstream 67129 48591856 ~ 48592089 (+) True G152190
TU174275 lncRNA downstream 38275 48699197 ~ 48705189 (+) True G152213
TU174682 lncRNA downstream 129288 48790210 ~ 48790509 (+) True G152589
TU174683 lncRNA downstream 129638 48790560 ~ 48791014 (+) True G152590
TU174684 lncRNA downstream 130554 48791476 ~ 48791675 (+) True G152591
TU174704 lncRNA downstream 142058 48802980 ~ 48803181 (+) True G152611
XM_021564236.2 mRNA upstream 157338 48481528 ~ 48501880 (+) True prr5l
XM_021564195.2 mRNA upstream 211431 48394983 ~ 48447787 (+) True fcsk
XR_005036978.1 mRNA upstream 242160 48412707 ~ 48417058 (+) True LOC118940424
XM_036949793.1 mRNA upstream 525244 48066992 ~ 48133974 (+) False osbpl5
XM_021564280.2 mRNA downstream 75597 48736519 ~ 48738551 (+) True cdkn1cb
XM_021564368.2 mRNA downstream 1088191 49749113 ~ 49767125 (+) True LOC110490948
XM_036949980.1 mRNA downstream 1407287 50068209 ~ 50093310 (+) True LOC110491010
XM_021564376.2 mRNA downstream 1437465 50098387 ~ 50100624 (+) False LOC110491026
XM_021564382.2 mRNA downstream 1489539 50150461 ~ 50159171 (+) True LOC110491039
TU174225 other upstream 101532 48556782 ~ 48557686 (+) True G152167
TU172952 other upstream 1111639 47497948 ~ 47547579 (+) True G150997
TU172245 other upstream 1673992 46981719 ~ 46985226 (+) True uevld
TU169948 other upstream 3166839 45472745 ~ 45492379 (+) True G148191
TU169947 other upstream 3186589 45472082 ~ 45472629 (+) False G148191
TU176287 other downstream 1437494 50098416 ~ 50100474 (+) True LOC110491026
TU177155 other downstream 2504493 51165415 ~ 51167174 (+) True G154859
TU177860 other downstream 2660874 51321796 ~ 51322433 (+) True LOC110501653
TU177846 other downstream 2751344 51412266 ~ 51417118 (+) True rl28
TU177903 other downstream 2759925 51420847 ~ 51421122 (+) True G155541

Expression Profile