RNA id: TU176510


Basic Information

Item Value
RNA id TU176510
length 3499
RNA type TUCP
GC content 0.43
exon number 5
gene id G154300
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 50101430 ~ 50107447 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAAAAATAAACATGACGGCGCAAATTCCTACCCATCGTCCgattactttcgatttctagaaagtgttttactcaattatttcgatcaatgttgagctcacccgtgatgtgattaattataaatagtcattgctattagctaattcatattgtggtTTCTGTCAGCCTAGAGTTATctaaatatgaccgcttgtgttacgtcaatctttcctcagcgcTAGGACTAATGAACAGTATCTACATTTTCCGgttctatgattgagtgtagtctggcccaggagtgtgaaggtgaaaggAAAGGCAATgaagcaacgaaccgcccttgctgtctctgcctgcccggtttccctctctccactgggattctctgcctctaaccctattacaggggctgagtcactggcttactggtgctctttcatgccatccctaggaggggtgcgtcacttgagtgggttgagtcactgatgtgatcttcctgtctgggttggcgcctccCCTTGGGTtatgccgtggcggagatctccGTGGGCTATAATcgaccttgtctcaggatggacctgagccctaggaccatgcctcaggactatctggcctgatgactccttgctgtccccagtccacctggtcatgctgctgctccagtctcaacagttctgcctgcggctatggaaccctgacctgttcaccggacgtgccacctgtcccagacctgctgatttcaactctctagagacagctggaatggtagagatactctgtctgatcggctatgaaaagccaactgacatttactcctgaggtgctggcctgttgcaccctctacaatcactgtgattattattatttgaccctgctggtcatctatgaacatttgaacatcttggccatgttctgttataatctccacccggcacagcccgaagaggactggccacccttcatagcctggttcctatctaggtttctttctaggttctggcctttctagggagtttttcctatccacattgcttcaacacctgcattgcttgctgtttgggttttaggctgggtttctgtacagcactttgagatatcagctgatgtcagtagggctttataaatacatttgattgaaatttgattgaagtagttgtgtggtcagtagttgtgtgtggttcagtagttttgtgtggttcagtaggtttgcggttcagtagttgtgtggttctgTTGCTACTTTTCTGGGCTCTACAGTATGGACATGGTCAGTGGTTGTGGTCCGTATTTGGTTGGTTCTGATGCTACTTTTCTGGGCCCTACAGTATGGacatggtcagtagttgtggtccgTATTTGTTTGGTTCTGATGCTACTTTTCTGGGCCCTACAGTATGGACATGGtcagtggttgtggtcagtagttgtgtggttttggtcagtagttgtgtggttgtgtatttgtgtggttgtggttcagtagttgtgtggttgtggtcagtatttGGGTGGTTCTGATGCTACTTTTCTGGGCCCTACATTATGGacatggtcagtagttgtggttagTAGATGTGGTTGTGGGCAGTAGTTGTGTAGTTGTGGGCAGTAGTTGTGTggttgtgggcagtagttgtgtggttgtgggcAGTAGTTCTGTATTTAAATAGTTTTGTTGACAGTATTTGTGTGGTTCAGCAGTTGCGTTGTTCAGTAGTTGCGTGGCTATTGTCAGTAAACAAGCACACCATTCCAGACCGGTCTGCCTGTTTTACAGTTTGAATTGCTCTTCTAGCTAAAATGGTTGAAGACTTGTAGTGACCAGAATTTTCCCATTCTAGTCTTTGGCTCCTGAAATGCATTGGGATTCATGCAAATATCGTAATAGTGTGAaaagtattattagtagtatcaAAAAACATTTAAGCACACTGGCCAGTGGTGGTCTGGACATTTGACAGTTGTTTTGGTGTTGGTAACTTTTGCGGTTTTGGCAGCagaataatattattattaagtATGAACAGTTCGTAATGTTGTGCTTTGCTTTAAGCAAGCACACCTAATTATTTCAGGCCACTAATTCAGCTGATTGGCAAGGTGAGCATCAACAAGCCCAAGTTGGAGATGTGCTGCGACAAGTAGGATCCAAAACTGGTGGCTGACTTGTTGGTGGCCCTTCTGCCGAGAACTGTGCTGGCGAGCAGCAACCAACCATTCAGCATAAGGCTATGTGTGTAAGGAGAAGCTGGACGATTACATTGTGGAGGCCGTCCCCGGTAACATTTTCACTAATTTTACCTCATGTTACCAGTTTCATGTACAGCTTCTATATGCGTTCTCATTGTGCTggaatattattatttattggaAAGTCCCTACTCATCAGCCACTATTAATGGtcataaatgttatttttttcttctctcttcctttcacggCTCCTTTCTTCTGTCTTTTATCTCTATCTCTAGCCTATCATTTTCTTTTTATCCTCATGTTCCCTTTTTTCTCAACatttctctcttttccccttgctctcctctctgtctttatccTCTCACTTTCCCCTCTGTCCTACTTTCTGTCCATCCATTTtctacatttttatatttttctctttctttttcatcCTCTTTTTGTATTGTTTCTCCTCTCTCGCTTTAcctttctctctatccttctctcaatttcttcatctctctttcccccttcttTCTTGTCTCTCATTCCCCTCTACCTCCATTCTCTTTATCCTATTTCTAACTTTCTCTATTCTCTCGCCTTCTCTTTTAATACCCATTTCTTCAGCAATTCCACACCTTTTTTTCAGGGAATATACcttttccatttatttattttttttcataTGCACGGCAGCTTTTGATTAAGTTTTTGGGGTATGTTTTGTGTGCGCACAGGCTTGCTTAAGTTTGTGTGATTCTTGAGATTGTTGAAGCTTGAGCTTTTTATTGATCTAATACAATGTTGCATTATGTCAGTACCATAAAGCATTAGTTTTTTGGTCAGTTCAACCCAAAAAAGAGGGGACAAAGACCATAGTATCATGGTAATAATACATTGTAAACAACTACCATGCTTTCCTGTTTACATGCTGCTAGTACTAAAACACATGCAGTCACTCCACCTGTGGTAGTACAATCAACAAAATACATGGCTTTTGGGTCACTAGCATGGCAGGAACATACTATGGTATTTGCACCATGAACCATGAAAAATATGAAAGGTCCATGGTATTCTTTTCCATTGTACTAACATGGTACATGTTTGTAAGGGCTGTCTAGTTCTTAACCGTACATCCCACACACACATTAGGTTGTGCTTTAGCATCAGTTTGAGAGGCTCACAGATCAATGCTAAGCTATCAATTGCCTATAATAAAATTGTTGAATTGTGCTGTGTAGGCCTCTATTTGACATCTACAAAAGACTGTTGGGTGGGATGAAGGTGTTTTGTTGAGATGCAAGAAGACAGTGTCTTAGTCATTTAACTGGAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU176472 lncRNA downstream 8125 50091176 ~ 50093305 (-) True G154271
TU176443 lncRNA downstream 116421 49984745 ~ 49985009 (-) True G154249
TU176435 lncRNA downstream 123612 49977608 ~ 49977818 (-) True G154241
TU176169 lncRNA downstream 161683 49939297 ~ 49939747 (-) True G153988
TU176138 lncRNA downstream 189438 49911571 ~ 49911992 (-) True G153958
TU176523 lncRNA upstream 8602 50116049 ~ 50116251 (-) True G154307
TU176526 lncRNA upstream 11873 50119320 ~ 50119588 (-) True G154310
TU176529 lncRNA upstream 20276 50127723 ~ 50127951 (-) True G154313
TU176530 lncRNA upstream 22174 50129621 ~ 50130137 (-) False LOC118937274
TU176531 lncRNA upstream 23352 50130799 ~ 50131269 (-) True LOC118937274
XM_021564372.2 mRNA downstream 63538 49962896 ~ 50037892 (-) False LOC110490984
XM_021564373.2 mRNA downstream 63538 49962896 ~ 50037892 (-) True LOC110490984
XM_021564371.2 mRNA downstream 264383 49802029 ~ 49837047 (-) False LOC110490968
XM_036949960.1 mRNA downstream 264389 49802029 ~ 49837041 (-) False LOC110490968
XM_036949965.1 mRNA downstream 270253 49802029 ~ 49831177 (-) False LOC110490968
XM_021564378.2 mRNA upstream 17114 50124561 ~ 50127403 (-) True plscr3a
XR_005034525.1 mRNA upstream 22068 50129515 ~ 50130983 (-) False LOC118937274
XM_021564431.2 mRNA upstream 164771 50272218 ~ 50287180 (-) False LOC110491057
XM_036950023.1 mRNA upstream 164771 50272218 ~ 50287727 (-) True LOC110491057
XM_036950101.1 mRNA upstream 367185 50474632 ~ 50535936 (-) False LOC110491068
TU174069 other downstream 1797767 48303311 ~ 48303663 (-) True G152024
TU173950 other downstream 1874486 48226299 ~ 48226944 (-) True G151920
TU173905 other downstream 1913152 48187958 ~ 48188278 (-) True G151875
TU173467 other downstream 2250082 47850785 ~ 47851348 (-) True G151474
TU172611 other downstream 2895997 47194893 ~ 47205433 (-) False G150675
TU176559 other upstream 49239 50156686 ~ 50157825 (-) True G154338
TU177312 other upstream 308296 50415743 ~ 50452147 (-) True G155003
TU177396 other upstream 472351 50579798 ~ 50581349 (-) True G155072
TU177629 other upstream 863629 50971076 ~ 50971935 (-) True G155281
TU177680 other upstream 932423 51039870 ~ 51049880 (-) False LOC110491241

Expression Profile