RNA id: TU177298


Basic Information

Item Value
RNA id TU177298
length 848
lncRNA type antisense_over
GC content 0.46
exon number 2
gene id G154989
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 50393376 ~ 50446304 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ccacatgtttggtgtgtctcccaggtggcttgtggcaaactttaaacgacactttttatggatatctttaagaaatggctttcttcttgccactcttccataaaggccagatttgtgcaatatacgactgattgttgtcctatggacagagtctcccacctcagctgtagatctctgcagttcatccagagtgatcatgggcctcttggatgcatctctgatcagtcttctccttgtatgagctgaaagtttagagggacggccaggtcttggtagatttgcagtggtctgatactccttccatttcaatattatcgcttgcacagtgctccttgggatgtttaaagcttgggaaatatttttctatccaaatccggctttaaacttcttcacaacagtatcttggacctgcctggtgtgttccttgttcttcatgatgctctctgcgcttttaacggacctctgagactatcacagtgcaggtgcatttatacggagacttgattacacacaggtggattgtatttatcatcattagtcatttaggtcaacattggaccattcagagatcctcactgaacttctggagagagtttgctgcactgaaagtaaaggggctgaataattttgcacgcccaatttttcagtttttgatttgttaaaaaagttttaaatatccaataaatgtcgttccacttcatgattgtgtcccacttgttgttgattcttcacaaaaaaatacagttttatatctttatgtttgaagcctgaaatatggcaaaaggtcgcaaagttcaagggggccgaatactttcgcaaggcactgtatgtccaaaacacatcaaaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU176670 lncRNA downstream 89227 50301824 ~ 50304149 (-) True G154430
TU176583 lncRNA downstream 196394 50178803 ~ 50196982 (-) True G154355
TU176532 lncRNA downstream 261578 50131515 ~ 50131798 (-) True G154316
TU176531 lncRNA downstream 262107 50130799 ~ 50131269 (-) True LOC118937274
TU176530 lncRNA downstream 263239 50129621 ~ 50130137 (-) False LOC118937274
TU177366 lncRNA upstream 77912 50524216 ~ 50524480 (-) True G155042
TU177384 lncRNA upstream 116472 50562776 ~ 50563027 (-) True G155060
TU177388 lncRNA upstream 124062 50570366 ~ 50570567 (-) True G155064
TU177394 lncRNA upstream 128657 50574961 ~ 50575278 (-) True G155070
TU177397 lncRNA upstream 141096 50587400 ~ 50587940 (-) True G155073
XM_036950023.1 mRNA downstream 105649 50272218 ~ 50287727 (-) True LOC110491057
XM_021564431.2 mRNA downstream 106196 50272218 ~ 50287180 (-) False LOC110491057
XR_005034525.1 mRNA downstream 262393 50129515 ~ 50130983 (-) False LOC118937274
XM_021564378.2 mRNA downstream 265973 50124561 ~ 50127403 (-) True plscr3a
XM_021564373.2 mRNA downstream 355484 49962896 ~ 50037892 (-) True LOC110490984
XM_036950101.1 mRNA upstream 28328 50474632 ~ 50535936 (-) False LOC110491068
XM_036950090.1 mRNA upstream 28328 50474632 ~ 50535937 (-) False LOC110491068
XM_036950111.1 mRNA upstream 28328 50474632 ~ 50536434 (-) False LOC110491068
XM_036950081.1 mRNA upstream 28328 50474632 ~ 50561304 (-) False LOC110491068
XM_036950051.1 mRNA upstream 28328 50474632 ~ 50561306 (-) False LOC110491068
TU176559 other downstream 235551 50156686 ~ 50157825 (-) True G154338
TU176510 other downstream 285929 50101430 ~ 50107447 (-) False G154300
TU176505 other downstream 286639 50101553 ~ 50106737 (-) True G154300
TU174069 other downstream 2089713 48303311 ~ 48303663 (-) True G152024
TU173950 other downstream 2166432 48226299 ~ 48226944 (-) True G151920
TU177396 other upstream 133494 50579798 ~ 50581349 (-) True G155072
TU177629 other upstream 524772 50971076 ~ 50971935 (-) True G155281
TU177680 other upstream 593566 51039870 ~ 51049880 (-) False LOC110491241
TU177681 other upstream 593566 51039870 ~ 51049880 (-) True LOC110491241
TU177982 other upstream 965965 51412269 ~ 51417110 (-) False G155610

Expression Profile