RNA id: TU177322


Basic Information

Item Value
RNA id TU177322
length 862
lncRNA type read_through
GC content 0.44
exon number 3
gene id G155008
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 50427112 ~ 50465114 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tctgtatttcattttcaataaatcttctaaaatgtaaaaaaaagaaaaaagaaggggtaatgtgtgtagatggttgagaaaaaaacagccatttcctccattttgaattcaggcagcaacaacacaatgtggaataaggcAAAGGATACACTCTGAAGGCACTGTCATGAGTATCTTGTCTTTGGAACCTCTCAGAGGAGCGTGTCTGTTTCCCCATATGCATATGTCCGTCTATTGTTTGTCGTAATCGTTCGCTTATCTTTGGGTACAGCATTTTCCACACAAATCAATTATTCCTGACAAGGCACTGTATTGTATATGAGAAACCATGCTGCCCCCAGTCCTTACCTGTGCGAGTAGTAGAACAGAAGCTCCTCCAGCACAGCGCAGAAGGCCATCTCCAACAGGCCTCGGTGGAAGGTGGGCAGCTCTGGGCCGCAGGGATTCCCACTAGAAAACATAACCGCCCAgcacaccaccaccatgggagcAGAACAGAAGCTCCTCCAGCACAGCACAGAAGGCCATCTCCAACAGGCCTCGGTGGAAGGTGGGCAGCTCTGGGCCGCAGGGATTCCCACTAGAAAACATAACCGCCCAgcacaccaccaccatgggagcAGAGATGAAGAGCTGGTTGAAGACCACCGTCTTCACCGCGTGGCGCAGCTTCACTGGGTCAACGGGTTGTTCTTGTCCACCTGTATTCTGTAACGGGTGATGAAGTTGGGCATTCCAGTGTAATCAACCAGCATGAGCAGAAGATTGGACCCCCAGAAAGCCGCAAAAGGCACAAACATCGCCCCTGTTCAGCACAACCAGAATCAATGCATTACATGCAATACAACAACCGCATCATGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU176670 lncRNA downstream 122963 50301824 ~ 50304149 (-) True G154430
TU176583 lncRNA downstream 230130 50178803 ~ 50196982 (-) True G154355
TU176532 lncRNA downstream 295314 50131515 ~ 50131798 (-) True G154316
TU176531 lncRNA downstream 295843 50130799 ~ 50131269 (-) True LOC118937274
TU176530 lncRNA downstream 296975 50129621 ~ 50130137 (-) False LOC118937274
TU177366 lncRNA upstream 59102 50524216 ~ 50524480 (-) True G155042
TU177384 lncRNA upstream 97662 50562776 ~ 50563027 (-) True G155060
TU177388 lncRNA upstream 105252 50570366 ~ 50570567 (-) True G155064
TU177394 lncRNA upstream 109847 50574961 ~ 50575278 (-) True G155070
TU177397 lncRNA upstream 122286 50587400 ~ 50587940 (-) True G155073
XM_036950023.1 mRNA downstream 139385 50272218 ~ 50287727 (-) True LOC110491057
XM_021564431.2 mRNA downstream 139932 50272218 ~ 50287180 (-) False LOC110491057
XR_005034525.1 mRNA downstream 296129 50129515 ~ 50130983 (-) False LOC118937274
XM_021564378.2 mRNA downstream 299709 50124561 ~ 50127403 (-) True plscr3a
XM_021564373.2 mRNA downstream 389220 49962896 ~ 50037892 (-) True LOC110490984
XM_036950101.1 mRNA upstream 9518 50474632 ~ 50535936 (-) False LOC110491068
XM_036950090.1 mRNA upstream 9518 50474632 ~ 50535937 (-) False LOC110491068
XM_036950111.1 mRNA upstream 9518 50474632 ~ 50536434 (-) False LOC110491068
XM_036950081.1 mRNA upstream 9518 50474632 ~ 50561304 (-) False LOC110491068
XM_036950051.1 mRNA upstream 9518 50474632 ~ 50561306 (-) False LOC110491068
TU176559 other downstream 269287 50156686 ~ 50157825 (-) True G154338
TU176510 other downstream 319665 50101430 ~ 50107447 (-) False G154300
TU176505 other downstream 320375 50101553 ~ 50106737 (-) True G154300
TU174069 other downstream 2123449 48303311 ~ 48303663 (-) True G152024
TU173950 other downstream 2200168 48226299 ~ 48226944 (-) True G151920
TU177396 other upstream 114684 50579798 ~ 50581349 (-) True G155072
TU177629 other upstream 505962 50971076 ~ 50971935 (-) True G155281
TU177680 other upstream 574756 51039870 ~ 51049880 (-) False LOC110491241
TU177681 other upstream 574756 51039870 ~ 51049880 (-) True LOC110491241
TU177982 other upstream 947155 51412269 ~ 51417110 (-) False G155610

Expression Profile